Sequence 1: | NP_001352465.1 | Gene: | SCN9A / 6335 | HGNCID: | 10597 | Length: | 1988 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_498054.2 | Gene: | nca-2 / 175674 | WormBaseID: | WBGene00003558 | Length: | 1785 | Species: | Caenorhabditis elegans |
Alignment Length: | 2099 | Identity: | 401/2099 - (19%) |
---|---|---|---|
Similarity: | 725/2099 - (34%) | Gaps: | 709/2099 - (33%) |
- Green bases have known domain annotations that are detailed below.
Human 122 ILVHSLFSMLIMC---------------TILTNCIFMTMNNPPDWTKNVEYTFTGIYTFESLVKI 171
Human 172 LARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVN-------------------LGNVSALRTFR 217
Human 218 VLRALKTISVIPGLKTIVGALI-QSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRNSLE 281
Human 282 -NNETLE--SIMNTLESEEDFRKYFYYLEGSKDALLCGFSTDSGQCPEGYTCVKIGRNP-DYG-Y 341
Human 342 TSFDTFSWAFLALFRLMTQDYWENLYQQTLRAAGKTYMIF-FVVVIFLGSFYLINLILAVVAMAY 405
Human 406 EEQNQANIEEAKQKELEFQQMLDRLKKEQEEAEAIAAAAAEYTSIRRSRIMGLSESSSE---TSK 467
Human 468 LSSKSAKERRNRRKKKNQKKLSSGEEKGDAEKLSKSESEDSIRRKSFHLGVEGHRRAHEKRLSTP 532
Human 533 NQSPLSIRGSLFSARRSSRTSLFSFKGRGRDIGSETEFADDEHSIFGDNESRRGSLFVPHRPQER 597
Human 598 RSSNISQASRSPPMLPVNGKMHSAVDCNGVVSLVDGRSALMLPNGQLLPEVIIDKATSDDSGTTN 662
Human 663 QIHKKRRCSSYLLSEDMLNDPNLRQRAMSRASILTNTVEEL------EESRQKCPPWWYRFAHKF 721
Human 722 LIWNCSPYWIKFKKCIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTGI 786
Human 787 FAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPT 851
Human 852 L-NMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINDDCTLPRWH-MNDFF 914
Human 915 HSFLIVFRVLCGE-W----IETMWDCME--VAGQAMCLIVYMMVMVIGNLVVLNLFLALLLSSFS 972
Human 973 SD-------NLTAIEEDPDANNLQI-------------AVTRIKKGINYVKQTLREFILKAF--- 1014
Human 1015 -------------------------SKKPKISREIRQAEDLNTK----------KENYI----SN 1040
Human 1041 HTLAEMSKGHNFLK----------EKDKISGFGSSVDKHLMEDSDGQSFIHN----PSLTVTVPI 1091
Human 1092 APGESDLENMNAEELSSDSDSEYSKVRLNRSSSSECSTVDNPLPGEGEEAEAEPMNSDEPEACFT 1156
Human 1157 DGCVWRFSCCQV------NIESGKGKIWWNIRKTCYKIVEHSWFESFI----------VLMILLS 1205
Human 1206 SGALAFEDIYIERKKTI---KIILEYADKIFTYIFILEMLLKWIAYGY----KTYFTNAWCWLDF 1263
Human 1264 LIVDVSLVTLV--ANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLL 1326
Human 1327 VCLIFWLIFSIMGVNLFAGKFYECINTTDGSRFPASQVPNRSECFALMNVSQNVR---------- 1381
Human 1382 -----------WKNLK-VNFDNVGLGYLSLLQVATFKGWTI---IMYAAVDSVNVDKQPKYEYSL 1431
Human 1432 YMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKP 1496
Human 1497 IPRP--GNKIQGCIFDLVTNQAFDISIMVLICLNMVTMM----VEKEGQSQHMTEVLYWINVVFI 1555
Human 1556 ILFTGECVLKLISLRHYYFTVG--W----NIFDFVVVIIS---IVGMFLADLIETYFVSPTL--- 1608
Human 1609 -------FRVIRLARIGRILRL--VKGAKG-IRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGM 1663
Human 1664 SNFAYVKKEDGINDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPKKVHPGSSV-E 1727
Human 1728 GDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSV-ATEESTEPLSEDDFEMFYEVWEKFDP 1791
Human 1792 DATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEM 1856
Human 1857 DSL--RSQMEERFMSANPSKVSYEPITTTLKRKQEDVSAT-----VIQRAYRRYRLRQNV-KNIS 1913
Human 1914 SIYIKDGDRDDDLLNKKDMAFDNVNENSSPEKTDATSSTTS-PPSYDSVTK--------PDKEKY 1969
Human 1970 EQDRTEKEDKGKDSKESKK 1988 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCN9A | NP_001352465.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 26..55 | ||
I. /evidence=ECO:0000305 | 112..410 | 68/328 (21%) | |||
Ion_trans | 125..410 | CDD:306908 | 67/325 (21%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 461..543 | 11/84 (13%) | |||
Na_trans_cytopl | 488..681 | CDD:314757 | 17/192 (9%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 565..611 | 0/45 (0%) | |||
II. /evidence=ECO:0000305 | 726..989 | 55/278 (20%) | |||
Ion_trans | 743..956 | CDD:306908 | 43/221 (19%) | ||
Na_trans_assoc | 982..1187 | CDD:310839 | 45/279 (16%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1102..1148 | 8/45 (18%) | |||
III. /evidence=ECO:0000305 | 1180..1488 | 74/351 (21%) | |||
Ion_trans | 1191..1466 | CDD:306908 | 69/318 (22%) | ||
Na_channel_gate | 1458..1510 | CDD:240441 | 8/53 (15%) | ||
IV. /evidence=ECO:0000305 | 1497..1795 | 94/327 (29%) | |||
Ion_trans | 1514..1770 | CDD:306908 | 80/283 (28%) | ||
GPHH | 1774..1837 | CDD:318993 | 8/62 (13%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1934..1988 | 13/62 (21%) | |||
nca-2 | NP_498054.2 | Ion_trans | 95..371 | CDD:278921 | 65/347 (19%) |
Ion_trans | 444..649 | CDD:278921 | 56/285 (20%) | ||
Ion_trans | 959..1202 | CDD:278921 | 62/266 (23%) | ||
Ion_trans | 1288..1518 | CDD:278921 | 73/246 (30%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |