Sequence 1: | NP_001352465.1 | Gene: | SCN9A / 6335 | HGNCID: | 10597 | Length: | 1988 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012826714.1 | Gene: | scn3a / 100125099 | XenbaseID: | XB-GENE-5812330 | Length: | 2019 | Species: | Xenopus tropicalis |
Alignment Length: | 2018 | Identity: | 1505/2018 - (74%) |
---|---|---|---|
Similarity: | 1705/2018 - (84%) | Gaps: | 35/2018 - (1%) |
- Green bases have known domain annotations that are detailed below.
Human 3 MLPPPGPQSFVHFTKQSLALIEQRIAERKSKE--PKEEKKDDDEEAPKPSSDLEAGKQLPFIYGD 65
Human 66 IPPGMVSEPLEDLDPYYADKKTFIVLNKGKTIFRFNATPALYMLSPFSPLRRISIKILVHSLFSM 130
Human 131 LIMCTILTNCIFMTMNNPPDWTKNVEYTFTGIYTFESLVKILARGFCVGEFTFLRDPWNWLDFVV 195
Human 196 IVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFA 260
Human 261 LIGLQLFMGNLKHKCFRNSLENNETLESIMN---------TLE--SEEDF---RKYFYYLEGSKD 311
Human 312 ALLCGFSTDSGQCPEGYTCVKIGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQQTLRAAGK 376
Human 377 TYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKELEFQQMLDRLKKEQEEAEAIA 441
Human 442 AAAAEYTSIRR----SRIMGLSESSSETSKLSSKSAKERRNRRKKKNQKKLSSGE-EKGDAEKLS 501
Human 502 KSESEDSIRRKSFHLGVEGHRRAHEKRLSTPNQSPLSIRGSLFSARRSSRTSLFSFKGRGRDIGS 566
Human 567 ETEFADDEHSIFGDNESRRGSLFVPHRPQERRSSNISQ---ASRSPPMLPVNGKMHSAVDCNGVV 628
Human 629 SLVDGRSALMLPNGQLLPEVIIDKATSDDSGTT--NQIHKKRRCSSYLLSEDMLNDPNLRQRAMS 691
Human 692 RASILTNTVEELEESRQKCPPWWYRFAHKFLIWNCSPYWIKFKKCIYFIVMDPFVDLAITICIVL 756
Human 757 NTLFMAMEHHPMTEEFKNVLAIGNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLV 821
Human 822 ELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQ 886
Human 887 LFGKSYKECVCKI-NDDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVYMM 950
Human 951 VMVIGNLVVLNLFLALLLSSFSSDNLTAIEEDPDANNLQIAVTRIKKGINYVKQTLREFILKAFS 1015
Human 1016 KKPKISREIRQAEDLNTKKENYISNHTLAEMSKGHNFLKEKD---KISGFGSSVDKHLMEDSDGQ 1077
Human 1078 SFIHNPSLTVTVPIAPGESDLENMNAEELSSDSDSEYSKVRLNRSSSSECSTVDNPLPGEGEEA- 1141
Human 1142 EAEPMNSDEPEACFTDGCVWRFSCCQVNIESGKGKIWWNIRKTCYKIVEHSWFESFIVLMILLSS 1206
Human 1207 GALAFEDIYIERKKTIKIILEYADKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFLIVDVSLV 1271
Human 1272 TLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFS 1336
Human 1337 IMGVNLFAGKFYECINTTDGSRFPASQVPNRSECFALMNVSQNVRWKNLKVNFDNVGLGYLSLLQ 1401
Human 1402 VATFKGWTIIMYAAVDSVNVDKQPKYEYSLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKK 1466
Human 1467 LGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKIQGCIFDLVTNQAFDISIMVLICLNMVT 1531
Human 1532 MMVEKEGQSQHMTEVLYWINVVFIILFTGECVLKLISLRHYYFTVGWNIFDFVVVIISIVGMFLA 1596
Human 1597 DLIETYFVSPTLFRVIRLARIGRILRLVKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIF 1661
Human 1662 GMSNFAYVKKEDGINDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPKKVHPGSSV 1726
Human 1727 EGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDP 1791
Human 1792 DATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEM 1856
Human 1857 DSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATVIQRAYRRYRLRQNVKNISSIYIKDGD 1921
Human 1922 RD-DDLLNKKDMAFDNVNENSSPEKTDATSSTTSPPSYDSVTKPDKEKYEQDRTEKEDKGKDSKE 1985
Human 1986 SKK 1988 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCN9A | NP_001352465.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 26..55 | 15/30 (50%) | |
I. /evidence=ECO:0000305 | 112..410 | 247/311 (79%) | |||
Ion_trans | 125..410 | CDD:306908 | 235/298 (79%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 461..543 | 51/82 (62%) | |||
Na_trans_cytopl | 488..681 | CDD:314757 | 126/198 (64%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 565..611 | 36/48 (75%) | |||
II. /evidence=ECO:0000305 | 726..989 | 225/263 (86%) | |||
Ion_trans | 743..956 | CDD:306908 | 190/213 (89%) | ||
Na_trans_assoc | 982..1187 | CDD:310839 | 117/208 (56%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1102..1148 | 26/46 (57%) | |||
III. /evidence=ECO:0000305 | 1180..1488 | 246/307 (80%) | |||
Ion_trans | 1191..1466 | CDD:306908 | 217/274 (79%) | ||
Na_channel_gate | 1458..1510 | CDD:240441 | 45/51 (88%) | ||
IV. /evidence=ECO:0000305 | 1497..1795 | 257/297 (87%) | |||
Ion_trans | 1514..1770 | CDD:306908 | 226/255 (89%) | ||
GPHH | 1774..1837 | CDD:318993 | 49/62 (79%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1934..1988 | 36/53 (68%) | |||
scn3a | XP_012826714.1 | Ion_trans | 151..430 | CDD:278921 | 217/278 (78%) |
Na_trans_cytopl | 512..627 | CDD:288761 | 76/114 (67%) | ||
Ion_trans | 786..982 | CDD:278921 | 172/195 (88%) | ||
Na_trans_assoc | 1008..1216 | CDD:284034 | 116/207 (56%) | ||
Ion_trans | 1239..1496 | CDD:278921 | 204/256 (80%) | ||
Na_channel_gate | 1488..1540 | CDD:240441 | 45/51 (88%) | ||
Ion_trans | 1562..1800 | CDD:278921 | 212/237 (89%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
NCBI | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG52281 | |
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000268 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10037 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X214 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 6.030 |