Sequence 1: | NP_001317189.1 | Gene: | SCN8A / 6334 | HGNCID: | 10596 | Length: | 1980 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_593894.1 | Gene: | cch1 / 2542812 | PomBaseID: | SPAC6F6.01 | Length: | 1854 | Species: | Schizosaccharomyces pombe |
Alignment Length: | 2110 | Identity: | 407/2110 - (19%) |
---|---|---|---|
Similarity: | 728/2110 - (34%) | Gaps: | 706/2110 - (33%) |
- Green bases have known domain annotations that are detailed below.
Human 105 RFSATPALYILSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTF--SNPPDWSKNVEYTFTG 167
Human 168 I---YTFESLVKIIARGFCIDG------------------FTFLRDPWNWLDFSVIMMAYVTEFV 211
Human 212 DLGNVSALRTFRV---LRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLF 273
Human 274 MGNLRNKCVVWPINFNESYLENGT-KGFDWEEYINNKTNFYTVPGMLEPLLCGNSSDAGQCPEGY 337
Human 338 QCMKAG-----RNPNYGYTSFDTFSWAFLALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFV 397
Human 398 GSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMATSAGTVSEDA 462
Human 463 IEEEGEEGGGSPRSSSEISKLSSKSAKERRNRRKKRKQKELSEGEEKGDPEKVFKSESEDGMRRK 527
Human 528 AFRLPDNRIGRKFSIMNQSLLSIPGSPFLSRHNSKSSIFSFRGPGRFRDPGSENEFADDEHSTVE 592
Human 593 ESEGRRDSLFIPIRARERRSSYSGYSGYSQGSRSSRIFPSLRRSVKRNSTVDCNGVVSLIGGPGS 657
Human 658 HIGGRLLPEATTEVEIKKKGPGSLLVSMDQLASYGRKDRINSIMSVVTNTLVEELEESQRKCPPC 722
Human 723 WYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPQFEHVLAV 787
Human 788 GN--LVFTG----IFTAEMFLKLIAMDPYY--YFQEGWNIFDGFIVSLSLMELSLADVEGLSV-- 842
Human 843 --LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECV 905
Human 906 CKINQDCELPRWHMHD--------FFHSFLIVFRVLCGE-WIETMWDCMEVAGQAMCL------- 954
Human 955 --IVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVAWTKLKVHA 1017
Human 1018 FMQAHFKQREADEVKPLDELYEKKANCIANHTGADIHRNGDFQKNGN--GTTSGIGSSVEKYIID 1080
Human 1081 EDHMSFINNPNLTVRVPIAVGESDFENLNTED---VSSESDPEGSKDKL-------------DDT 1129
Human 1130 SSS-----------------EGSTIDIKPEVEEVPVEQPE------EYLD------PDACFTEGC 1165
Human 1166 VQRFKCCQVNIEEGLGKSW-------WILRKTCFLIVEHNWFETFIIFMILLSSGALAFEDIY-- 1221
Human 1222 IEQRKTIRTILEYA-----DKVFTYIFILEMLLKWTAYGFV----KFFTNAWCWLDFLIVAVSLV 1277
Human 1278 SLIANALGYSELGAIKSLRTLRALRPLRALSRFE-GMRVVVNALVGAIPSIMNVLLVCLIFWLIF 1341
Human 1342 SIMGVNLFAGKYHYCFNETSEIRFEIEDVNNKTEC--EKLMEGNNTEI----RWKN-VKINFDNV 1399
Human 1400 GAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPKYEDNIYMYIYFVIFIIFGSFFTLNLFIGVII 1464
Human 1465 DNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQK-PIPRPLNKIQGIVFDFVTQ------Q 1522
Human 1523 AF-DIVIMMLICLNMVTMMVETDTQSKQMENILYWINLVFVIFFTCECVLKMFALRHYYFTIG-W 1585
Human 1586 NIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPA 1650
Human 1651 LFNIGLLLFLVMFIF------SIFGMSNFAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDG 1709
Human 1710 LLLPILNRPPDCSLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFS-VAT 1773
Human 1774 EESA-DPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADAL-----------EHPLR------ 1820
Human 1821 --------VP------------------------------KPNTIELIAMDLPMVSGDRIHCLDI 1847
Human 1848 LFAFTKRVLGDSGELDILRQQMEERFVASNPSK-VSYEP----ITTTLRRKQ------------- 1894
Human 1895 ------EEVSAVV----LQRAYRGHLARRGFICKKTTSNKLENGGTHREKKEST-PSTASLPSYD 1948
Human 1949 SVTKPEKEKQQRAEEGRRERAKRQKEVRES 1978 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCN8A | NP_001317189.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..20 | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 28..62 | ||||
I. /evidence=ECO:0000305 | 114..442 | 77/359 (21%) | |||
Ion_trans | 131..421 | CDD:395416 | 72/321 (22%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 446..530 | 0/83 (0%) | |||
Na_trans_cytopl | 504..702 | CDD:403218 | 7/197 (4%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 568..602 | 5/33 (15%) | |||
II. /evidence=ECO:0000305 | 735..1007 | 67/301 (22%) | |||
Ion_trans | 752..965 | CDD:395416 | 53/242 (22%) | ||
Na_trans_assoc | 991..1192 | CDD:399489 | 41/254 (16%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1107..1148 | 12/73 (16%) | |||
III. /evidence=ECO:0000305 | 1180..1495 | 79/340 (23%) | |||
Ion_trans | 1197..1473 | CDD:395416 | 73/294 (25%) | ||
Na_channel_gate | 1465..1517 | CDD:240441 | 14/52 (27%) | ||
IV. /evidence=ECO:0000305 | 1504..1801 | 83/312 (27%) | |||
Ion_trans | 1522..1776 | CDD:395416 | 67/262 (26%) | ||
GPHH | 1788..1835 | CDD:407139 | 16/101 (16%) | ||
IQ | 1894..1915 | CDD:197470 | 7/43 (16%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1922..1980 | 13/58 (22%) | |||
cch1 | NP_593894.1 | Ion_trans | 201..485 | CDD:278921 | 68/466 (15%) |
Ion_trans | 533..748 | CDD:278921 | 57/254 (22%) | ||
Ion_trans | 968..1220 | CDD:278921 | 65/262 (25%) | ||
Ion_trans | 1289..1517 | CDD:278921 | 62/243 (26%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 83 | 1.000 | Domainoid score | I2557 |
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R175 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.840 |