Sequence 1: | NP_002967.2 | Gene: | SCN7A / 6332 | HGNCID: | 10594 | Length: | 1682 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012826714.1 | Gene: | scn3a / 100125099 | XenbaseID: | XB-GENE-5812330 | Length: | 2019 | Species: | Xenopus tropicalis |
Alignment Length: | 1953 | Identity: | 892/1953 - (45%) |
---|---|---|---|
Similarity: | 1184/1953 - (60%) | Gaps: | 298/1953 - (15%) |
- Green bases have known domain annotations that are detailed below.
Human 1 MLASPEPKGLVPFTKESFELIKQHIA---------KTHNEDHEEEDLKPTPDLEVGKKLPFIYGN 56
Human 57 LSQGMVSEPLEDVDPYYYKKKNTFIVLNKNRTIFRFNAASILCTLSPFNCIRRTTIKVLVHPFFQ 121
Human 122 LFILISVLIDCVFMSLTNLPKWRPVLENTLLGIYTFEILVKLFARGVWAGSFSFLGDPWNWLDFS 186
Human 187 VTVFEVIIRYSPLDFIPTLQTARTLRILKIIPLNQGLKSLVGVLIHCLKQLIGVIILTLFFLSIF 251
Human 252 SLIGMGLFMGNLKHKCFRWPQENE-------NETLH---NRTGNPY----YIRETENFYYLEGER 302
Human 303 YALLCGNRTDAGQCPEGYVCVKAGINPDQGFTNFDSFGWALFALFRLMAQDYPEVLYHQILYASG 367
Human 368 KVYMIFFVVVSFLFSFYMASLFLGILAMAYEEEKQRV---------------------------- 404
Human 405 ----------------------------------------------------GEISKKIEPKFQQ 417
Human 418 TGKELQ----------EGN---------------------------------------------- 426
Human 427 ------------------------------------ETDEA-KTIQI------------------ 436
Human 437 -----------------------------------EMKKRSPISTDTSLDVLEDATLRHK----- 461
Human 462 -------EELEKSKKICPLYWYKFAKTFLIWNCSPCWLKLKEFVHRIIMAPFTDLFLIICIILNV 519
Human 520 CFLTLEHYPMSKQTNTLLNIGNLVFIGIFTAEMIFKIIAMHPYGYFQVGWNIFDSMIVFHGLIEL 584
Human 585 CLANVAGMALLRLFRMLRIFKLGKYWPTFQILMWSLSNSWVALKDLVLLLFTFIFFSAAFGMKLF 649
Human 650 GKNYEEFVCHI-DKDCQLPRWHMHDFFHSFLNVFRILCGEWVETLWDCMEVAGQSWCIPFYLMVI 713
Human 714 LIGNLLVLYLFLA-LVSSFSSCKDVTAEENNEAKNLQLAVARIKKGINYVLLKILCKTQNVPKDT 777
Human 778 MDHVNEVYVKED--------ISDHTLSELSNTQDFLKDKEKSSGT-------EKN-ATENESQSL 826
Human 827 IPSPSVSETVPIASGESDIENLDNKEIQSKSGDGGSKEKIKQSSSSECSTVDIAIS--------- 882
Human 883 EEEEMFYGGERSKHLKNGCRRGSSLGQISGASKKGKIWQNIRKTCCKIVENNWFKCFIGLVTLLS 947
Human 948 TGTLAFEDIYMDQRKTIKILLEYADMIFTYIFILEMLLKWMAYGFKAYFSNGWYRLDFVVVIVFC 1012
Human 1013 LSLIGKT--REEL---KPLISMKFLRPLRVLSQFERMKVVVRALIKTTLPTLNVFLVCLMIWLIF 1072
Human 1073 SIMGVDLFAGRFYECIDPTSGERFPSSEVMNKSRCESLLF-NESMLWENAKMNFDNVGNGFLSLL 1136
Human 1137 QVATFNGWITIMNSAIDSVAVNIQPHFEVNIYMYCYFINFIIFGVFLPLSMLITVIIDNFNKHKI 1201
Human 1202 KLGGSNIFITVKQRKQYRRLKKLMYEDSQRPVPRPLNKLQGFIFDVVTSQAFNVIVMVLICFQAI 1266
Human 1267 AMMIDTDVQSLQMSIALYWINSIFVMLYTMECILKLIAFRCFYFTIAWNIFDFMVVIFSITGLCL 1331
Human 1332 PMTVGSYLVPPSLVQLILLSRIIHMLRLGKGPKVFHNLMLPLMLSLPALLNIILLIFLVMFIYAV 1396
Human 1397 FGMYNFAYVKKEAGINDVSNFETFGNSMLCLFQVAIFAGWDGMLDAIFNSKWSDCDPDKINPGTQ 1461
Human 1462 VRGDCGNPSVGIFYFVSYILISWLIIVNMYIVVVMEFLNIASKKKNKTLSEDDFRKFFQVWKRFD 1526
Human 1527 PDRTQYIDSSKLSDFAAALDPPLFMAKPNKGQLIALDLPMAVGDRIHCLDILLAFTKRVMGQDVR 1591
Human 1592 MEKVVSEIESGFLLANPFKITCEPITTTLKRKQEAVSATIIQRAYKNYRLRRNDKNTSDIHMIDG 1656
Human 1657 DRD 1659 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCN7A | NP_002967.2 | I. /evidence=ECO:0000305 | 100..401 | 167/314 (53%) | |
Ion_trans | 146..403 | CDD:278921 | 147/270 (54%) | ||
II. /evidence=ECO:0000305 | 487..758 | 158/272 (58%) | |||
Ion_trans | 522..717 | CDD:278921 | 114/195 (58%) | ||
Na_trans_assoc | 743..927 | CDD:284034 | 79/208 (38%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 801..871 | 32/77 (42%) | |||
III. /evidence=ECO:0000305 | 916..1224 | 172/313 (55%) | |||
Ion_trans | 951..1198 | CDD:278921 | 141/252 (56%) | ||
Na_channel_gate | 1194..1246 | CDD:240441 | 27/51 (53%) | ||
IV. /evidence=ECO:0000305 | 1233..1531 | 170/297 (57%) | |||
Ion_trans | 1268..1497 | CDD:278921 | 141/228 (62%) | ||
scn3a | XP_012826714.1 | Ion_trans | 151..430 | CDD:278921 | 151/278 (54%) |
Na_trans_cytopl | 512..627 | CDD:288761 | 8/114 (7%) | ||
Ion_trans | 786..982 | CDD:278921 | 114/195 (58%) | ||
Na_trans_assoc | 1008..1216 | CDD:284034 | 80/210 (38%) | ||
Ion_trans | 1239..1496 | CDD:278921 | 143/256 (56%) | ||
Na_channel_gate | 1488..1540 | CDD:240441 | 27/51 (53%) | ||
Ion_trans | 1562..1800 | CDD:278921 | 143/237 (60%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
NCBI | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG52281 | |
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10037 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 5.030 |