DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCN5A and Ca-alpha1T

DIOPT Version :10

Sequence 1:NP_932173.1 Gene:SCN5A / 6331 HGNCID:10593 Length:2016 Species:Homo sapiens
Sequence 2:NP_001259267.1 Gene:Ca-alpha1T / 31550 FlyBaseID:FBgn0264386 Length:3218 Species:Drosophila melanogaster


Alignment Length:2636 Identity:556/2636 - (21%)
Similarity:933/2636 - (35%) Gaps:994/2636 - (37%)


- Green bases have known domain annotations that are detailed below.


Human   110 ALYVLSPFHPIRRAAVKILVHSLFNMLIMCTILTNCVFMAQHDP-------PPWTKYVEYTFTAI 167
            ::..|:.:...|...:.::.:..|..:.:..||.||:.:..:.|       ....|.::.....|
  Fly   280 SIRALTQYTRPRNWCLMLITNPWFERVSILVILLNCITLGMYQPCVDDACVTNRCKILQIFDDII 344

Human   168 YTF---ESLVKILARGFCLHAFTFLRDPWNWLDFSVI---IMAYTTEFVDLGNVSALRTFRVLRA 226
            :.|   |..:|::|.|.| ...|:|.|.||.|||.::   ::.|.....:| |::|:||.||||.
  Fly   345 FAFFALEMTIKMVAMGIC-GKNTYLADSWNRLDFFIVLAGLLEYVMHVENL-NLTAIRTIRVLRP 407

Human   227 LKTISVISGLKTIVGALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTALNGTN 291
            |:.|:.|..::.:|..|:.::..|.:|::|..|...:|.:||:||:.|.||.:|           
  Fly   408 LRAINRIPSMRILVMLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWEGILRQRC----------- 461

Human   292 GSVEADGLVW--------------ESLDLY--LSDPENYLLKN-GTSDVLLCGN----SSDAGTC 335
            ..:..:|:|:              .||..|  .|..::|:... ..|.:.||||    ...:..|
  Fly   462 SLMRTEGMVYPLTVPEVYRVRVRVNSLSQYYEFSKDQDYICSTPNDSGMHLCGNFPPYRIGSLVC 526

Human   336 PEGYR---------------------CLKAGENPDHGYTSFDSFAWAFLALFRLMTQDCWERL-- 377
            .|..:                     |.::||||..|..|||:...|::|:|.:::.:.|..:  
  Fly   527 NEEAKLFDFNEPTNTSCVNWNQYYTTCKQSGENPFQGTISFDNIGMAWVAIFLVISLEGWTDIMY 591

Human   378 YQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQ----------------ATIA- 425
            |.|...|...  .|:|:|:|.:|||:::||.|.|:|..:.|..:                :|:| 
  Fly   592 YVQDAHSFWD--WIYFVLLIVIGSFFMINLCLVVIATQFSETKKREMERMRQERARYTSTSTLAS 654

Human   426 ETEEKE----------------KRFQEAMEMLKK----------EHEALTIRGVDTV----SR-- 458
            .|...|                :||:.  .||||          ..|.| :...|.:    ||  
  Fly   655 STNNSEPATCYAEIVKYIAHLWRRFKR--RMLKKYRLYKYQRQQRKEGL-LPNADNLTFSPSRIK 716

Human   459 --------------SSLE---MSPLAPVNS----------------------------------- 471
                          ||::   ::.:.|:||                                   
  Fly   717 CHHPKCPKYSNRKPSSIQDQMITVMVPLNSASNNINNNNNNNSNSSNHNGSGNHTAAGGGNNNNN 781

Human   472 --------------------------------------------HERRSKRRKRM----SSGTEE 488
                                                        |:.:.:::::.    |..||:
  Fly   782 NNNNNAASCTTVALVNGINGSAASVTMSSAHHQQHQLLQHQQQQHQNQQQQQQQQQHSSSDNTEQ 846

Human   489 -CGEDRLPKS---------------------------------DSED------------------ 501
             ...|.||:|                                 |||.                  
  Fly   847 SLAPDGLPRSSSLKKSTAHHQLKPEGSAAEQKTILLKFPQQMIDSEQLILQLGNLGKSHPCTSGF 911

Human   502 ----------------------GPRAMNHLSLTRGLSRTSMKP---------------------- 522
                                  .|.|:|....|.| :.|::.|                      
  Fly   912 LSPPTSASRRPSVMFNEYVLLHTPPALNADPATAG-TTTTVAPTVATVAGTAAAAAAAAATGSGS 975

Human   523 ------------------RSSRGSIFTFRR---------------RDLGSEAD-FADDEN----- 548
                              .:.:.:||:..:               :.:|:.|: :||...     
  Fly   976 GNNNHQNGGASGGAGTGGTTEKSNIFSTEKMTQAGDGSIWQVNLPQTIGTIANPYADCSELGIHD 1040

Human   549 --------------STA---GES--ESHHTSLLVPWPLRRTSAQGQPSPGTSAPGHALH------ 588
                          |.|   |:|  ||.:|||            .:..|.|:....|.|      
  Fly  1041 AMTCQELLAFSVAFSAALPTGQSTLESFYTSL------------ARCDPHTAEALRAHHKPRSVP 1093

Human   589 -GKKNSTVDCNGVVSLLG--AGD------PEATSP------GSHLLRPVMLEHPP---------D 629
             |:..:|....|...::.  |||      |...|.      .||.......||..         :
  Fly  1094 TGQNQTTPGAEGATVMVASTAGDTGQTLQPSTVSAVVGGTIDSHAANHRRKEHHQQSHHHHNNNN 1158

Human   630 TTTPS------EEPGGPQMLTSQAPCVDGFEEPGARQRALSAVSVLTSALEELEESRHKCPPCWN 688
            ||:.|      :..|..:|...:||..:..|:...      ...:..:||..|:|...:..|...
  Fly  1159 TTSHSRNYRSRQGQGNSRMREPRAPTGNYMEDYAC------CYDLYQNALSPLDERPRQRSPTTR 1217

Human   689 RLAQRYLIWECCPLWMSIKQGVKLVVMDPFTDLTITMCIVLNTLFMALEHYNMTSEFEEMLQVGN 753
            .|...|........|  |::.::.:|...:....|.:.|::|||.|.:|::|...|...:::..|
  Fly  1218 CLISVYRCMSRVCSW--IRRYIRRLVEHKYFQQGILLAILINTLSMGIEYHNQPPELTAIVETSN 1280

Human   754 LVFTGIFTAEMTFKIIALDPYYYFQQGWNIFDSIIVILSLMELGLSRMSN--------LSVLRSF 810
            :||:|||..||..|::|..|:.|...|:|:||.||||||.:|:..:.|.|        |||||:|
  Fly  1281 VVFSGIFAVEMLLKVVAEGPFRYIANGFNVFDGIIVILSAIEICQTFMGNGTGGGGSGLSVLRTF 1345

Human   811 RLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRDSDSGL 875
            ||||:.||.:..|.|...:.::..::..:.....:|.:.:|||:::||.|||..:.:..| :|||
  Fly  1346 RLLRILKLVRFMPNLRRQLFVMLRTMDNVAVFFSLLVLFIFIFSILGMYLFGGKFCKFLD-ESGL 1409

Human   876 -----------------LPRWHMMDFFHAFLIIFRILCGE-WIETMWDCMEVSGQSLCLLVFLLV 922
                             ..|.|..:...|.:.:|:||..| |...:::.||.:.. ...|.|:.:
  Fly  1410 ERECTCPEIISRHPQCECDRKHFNNILWATVTVFQILTQEDWNVVLFNGMEKTSH-WAALYFVAL 1473

Human   923 MVIGNLVVLNLFLALLLSSFS--------------------------------------ADNLTA 949
            |..||.|:.||.:|:|:..||                                      ||:.|.
  Fly  1474 MTFGNYVLFNLLVAILVEGFSSERNERREREQRELVKKLREETLAENYSDGMYDESRSEADSSTT 1538

Human   950 PDEDREMNN----------LQLALARI---------QRGLRFVKRTTWDFCCGLLRQRPQKPAAL 995
            .|...|:.|          ||.::..|         ||.|    :.|.|:   .:.:.|...||.
  Fly  1539 NDSYYEVRNRWRSAEDVRKLQDSVELIIEAKSNMHRQRLL----QPTHDY---QINELPASSAAP 1596

Human   996 AAQG------------------------------------------------------------- 999
            :|.|                                                             
  Fly  1597 SASGTSGASAPGDRERDRDRDRDRERDRDRDRERDREAGGGGKEEGAQHAKPRGGLKKTYSIKER 1661

Human  1000 -------------QLPSCIAT--------------------------PYSPPP------------ 1013
                         :.|..|.|                          |.|||.            
  Fly  1662 RSEAPRLSKIRLARDPPIITTTAATPQDSPSTTLEPGMSFRQWGDMEPPSPPSPSLLRPPNIFTG 1726

Human  1014 ---------PETEKVPP----TRKETRFEEGEQPGQGTPGD------------------------ 1041
                     |..:.:||    :.|........|.|.|..|.                        
  Fly  1727 GQRSLDEGIPSIDLIPPSPVLSHKPLNILNASQLGVGMGGGVPSTAGSSSSMHSVIIDDISKSSS 1791

Human  1042 ----PEPVCVPIAVAESDTDDQEE--------------------DEENSLGTEEESSKQQESQPV 1082
                ..|:.||...:.:|...|..                    ....:.|.....|...|..|:
  Fly  1792 STAAATPIYVPTISSTADAQSQSHSLNDVSVGSSPGGEIPATGMSRNANTGASTSGSSSSERLPL 1856

Human  1083 SGGPEAPPDSRTWSQ-----------VSATA---------------------------------- 1102
            :    .||...::.|           .||.|                                  
  Fly  1857 A----PPPQQGSFKQRLRRGSSKKRRASALALATDDNPARRTLDNQARRTQDEEEEQQQLNNGGD 1917

Human  1103 ------SSEAEASASQADWRQQWKAEPQ------------------------------------- 1124
                  :|.|..|.|.:..::..:..||                                     
  Fly  1918 NSCLLRNSNAVVSGSSSGTKETNRLSPQNSIRRLSNTLSIGSGPVGSRRASACIFNSQVYQNLNQ 1982

Human  1125 ----APGCGETPEDSC------------------------------------SEGSTADMTNTAE 1149
                .||.|:....|.                                    |.|:..:..|..:
  Fly  1983 PPKLRPGSGQRRMSSIELAFSKTSHLNLHNLEANRKSLSYTNSKMDLDKWNKSYGNLNEPDNMLQ 2047

Human  1150 L-------------------------LEQIPDLGQD--VKDPEDCFTEGCVRRCPCCAVDTTQ-- 1185
            .                         |:|:..|.|.  ::..:|.|:            .|||  
  Fly  2048 QYMEARDKRKNSISHYNLKKRLEEKELQQLQQLHQQQLLQQRQDSFS------------STTQQQ 2100

Human  1186 -----------------------APG------KVWW--------------------------RLR 1195
                                   .||      |:..                          |.|
  Fly  2101 QQQLQQHRLSKDQQQLAMQPHSMVPGGGERYSKLKMLIEQLTPKHFTTEREDYSLYIFPEDNRFR 2165

Human  1196 KTCYHIVEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLLEYADKMFTYVFVLEMLLKWVA 1260
            :.|...|...||:..::..|.|:...||.|...:....|.::.|..|:.:||.||.:||.:|.||
  Fly  2166 QICTWFVNQKWFDNVVLLFIALNCITLAMERPNIPPSSTERLFLATANYVFTVVFTVEMFIKVVA 2230

Human  1261 ----YGFKKYFTNAWCWLDFLIVDVSLVSLVANTLGFAE---MGPIKSLRTLRALRPLRALSRFE 1318
                ||...|||:.|..:|..:|.:|::.|:.:.:..:.   .|.::..|.||:|||||.::|..
  Fly  2231 TGMFYGHDAYFTSGWNIMDGSLVTISIIDLLMSLISESSPRIFGILRVFRLLRSLRPLRVINRAP 2295

Human  1319 GMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSQ 1383
            |:::||..|:.::..|.|::|:|..|::||.|:||.||.|.|..|    ||:   |...|.|..:
  Fly  2296 GLKLVVQTLLSSLRPIGNIVLICCTFFIIFGILGVQLFKGTFYYC----EGE---NIKGVRNADE 2353

Human  1384 CESLNLTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQWEYNLYMYI 1448
            |.  .:.|.: ||..|.|||::|...::|..:::..||::|||..:|:.|.::||...||.:..:
  Fly  2354 CR--RIPGNV-WTNRKYNFDDLGKALMSLFVLSSRDGWVNIMYTGLDAVGVDQQPIVNYNEWRLL 2415

Human  1449 YFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKK-LGSKKPQKPIPR 1512
            ||:.||:...||.||:|:||:::||::.:::        .|:::|...|.|: |..:|.::.:..
  Fly  2416 YFIAFILLVGFFVLNMFVGVVVENFHRCREE--------QEKEEKIRRAAKRALQMEKKRRRMHE 2472

Human  1513 P-----LNKYQGFIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKINILAKI-NLLFVAIF 1571
            |     .:..:.|:.::||.:.||:.|..:|.||:|||.:|. .:.|..:....|| |..|.|:|
  Fly  2473 PPYYTNYSPTRMFVHNVVTSKYFDLAIAAVIGLNVVTMAMEY-YKMPSGLKYALKIFNYFFTAVF 2536

Human  1572 TGECIVKLAALR-HYYFTNSWNIFDFVVVILSIVGTVLSDI----IQKYFFSPTLFRVIRLARIG 1631
            ..|..:||.||. ..|..:.||..|..:|:|||||.||.::    .|....:||:.||:|:.||.
  Fly  2537 ILEANMKLVALGWKLYLKDRWNQLDVGIVLLSIVGIVLEELETNTHQIIPINPTIIRVMRVLRIA 2601

Human  1632 RILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVKWE-----AGIDDM 1691
            |:|:|::.|.|||.||..:|.:||.:.|:|||.||:.||::..|:..|..::..     .|:.:.
  Fly  2602 RVLKLLKMANGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEIPCQGLGEH 2666

Human  1692 FNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPTLPNSNGSRGDCGSPAVGILFFTTYI 1756
            .:|..|..:.|.||::.|...|:|::...|...   ||..   ::..|..|.|..:..:||..::
  Fly  2667 AHFANFGMAFLTLFRVATGDNWNGIMKDTLRDN---CDDA---ADCVRNCCVSSVIAPIFFVIFV 2725

Human  1757 IISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADAL 1821
            :::..::||:.:|:::::.    |||.:.: ||:.||..|:..:...|.....|..:....|:|.
  Fly  2726 LMAQFVLVNVVVAVLMKHL----EESHKQM-EDELDMEVELERELVREQEFAQEQKLCQQLAEAQ 2785

Human  1822 SE----PLRIAKPNQI------SLINMD--LPMVSG 1845
            |:    |..:||...:      |..::|  .|.|||
  Fly  2786 SKAAAPPRPLAKVKSLPKNFIYSTPSLDKKFPAVSG 2821

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCN5ANP_932173.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..56
I. /evidence=ECO:0000305 113..420 95/363 (26%)
Ion_trans 130..423 CDD:459842 93/365 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 461..591 41/376 (11%)
Na_trans_cytopl 507..667 CDD:463401 44/275 (16%)
II. /evidence=ECO:0000305 699..969 96/352 (27%)
Ion_trans 716..927 CDD:459842 74/236 (31%)
Na_trans_assoc 953..1200 CDD:461936 73/650 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1005..1141 41/362 (11%)
III. /evidence=ECO:0000305 1187..1501 108/353 (31%)
Ion_trans 1204..1479 CDD:459842 97/281 (35%)
Na_channel_gate 1471..1523 CDD:240441 10/57 (18%)
IV. /evidence=ECO:0000305 1510..1807 97/312 (31%)
Ion_trans 1528..1782 CDD:459842 85/264 (32%)
Interaction with FGF13. /evidence=ECO:0000269|PubMed:22705208 1839..1901 5/9 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1959..2016
Interaction with NEDD4, NEDD4L and WWP2. /evidence=ECO:0000269|PubMed:15548568 1974..1977
Ca-alpha1TNP_001259267.1 Ion_trans 300..636 CDD:459842 93/350 (27%)
Ion_trans 1243..1495 CDD:459842 82/253 (32%)
Ion_trans 2175..2448 CDD:459842 97/290 (33%)
Ion_trans 2492..2728 CDD:459842 81/242 (33%)
Blue background indicates that the domain is not in the aligned region.

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