DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCN2A and unc-77

DIOPT Version :9

Sequence 1:NP_001035232.1 Gene:SCN2A / 6326 HGNCID:10588 Length:2005 Species:Homo sapiens
Sequence 2:NP_001293824.1 Gene:unc-77 / 177379 WormBaseID:WBGene00006809 Length:1867 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCN2ANP_001035232.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..61
I. /evidence=ECO:0000305 111..456
Ion_trans 128..435 CDD:366146
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 494..529
Na_trans_cytopl 514..709 CDD:371806
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 590..610
II. /evidence=ECO:0000305 741..1013
Ion_trans 758..971 CDD:366146
Binds SCN2B. /evidence=ECO:0000305|PubMed:30765605 917..918
Na_trans_assoc 997..1203 CDD:368948
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1120..1165
III. /evidence=ECO:0000305 1190..1504
Ion_trans 1207..1482 CDD:366146
Na_channel_gate 1474..1526 CDD:240441
IV. /evidence=ECO:0000305 1513..1811
Ion_trans 1531..1786 CDD:366146
GPHH 1798..1845 CDD:374878
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1935..2005
unc-77NP_001293824.1 Ion_trans 107..383 CDD:278921
Ion_trans 455..660 CDD:278921
Ion_trans 973..1214 CDD:278921
Ion_trans 1310..1534 CDD:278921
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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