| Sequence 1: | NP_001359503.1 | Gene: | ATXN2 / 6311 | HGNCID: | 10555 | Length: | 1155 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_038946069.1 | Gene: | Atxn2 / 288663 | RGDID: | 1306637 | Length: | 1429 | Species: | Rattus norvegicus |
| Alignment Length: | 1171 | Identity: | 1053/1171 - (89%) |
|---|---|---|---|
| Similarity: | 1094/1171 - (93%) | Gaps: | 39/1171 - (3%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSAT 65
Human 66 APSSVVAATS---GGGRPGLGRGRNSNKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNG 127
Human 128 GIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYAKRDA 192
Human 193 FTDSAISAKVNGEHKEKDLEPWDAGELTANEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDS 257
Human 258 SLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNSSERE 322
Human 323 GHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVN 387
Human 388 G------------GVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPS 440
Human 441 AHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHNPPSEAATPPVAR 505
Human 506 TSPSGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASPQAGIIPTEAVAMPIPAASPT 570
Human 571 PASPASNRAVTPSSEAKDSRLQDQRQNSPAGNKENIKPNETSPSFSKAENKGISPVVSEHRKQID 635
Human 636 DLKKFKNDFRLQPSSTSESMDQLLNKNREGEKSRDLIKDKIEPSAKDSFIENSSSNCTSGSSKPN 700
Human 701 SPSISPSILSNTEHKRGPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRS 765
Human 766 FSQPKPSTTPTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMP 830
Human 831 VNQAKTYRAGKVPNMPQQRQDQHHQSAMMHPASAAGPPIAATPP-AYSTQYVAYSPQQFPNQPLV 894
Human 895 QHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETS 959
Human 960 PSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQAL 1024
Human 1025 HLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVP 1089
Human 1090 QAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQ 1154
Human 1155 L 1155 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| ATXN2 | NP_001359503.1 | SM-ATX | 105..181 | CDD:373069 | 72/75 (96%) |
| PBP1 | 194..>339 | CDD:227507 | 138/144 (96%) | ||
| LsmAD | 249..310 | CDD:369058 | 60/60 (100%) | ||
| PRK12323 | <408..599 | CDD:237057 | 178/190 (94%) | ||
| PAM2 | 750..765 | CDD:336618 | 14/14 (100%) | ||
| PHA03247 | <769..1087 | CDD:223021 | 306/318 (96%) | ||
| Atxn2 | XP_038946069.1 | PHA03247 | <6..271 | CDD:223021 | |
| SM-ATX | 369..442 | CDD:405176 | 70/72 (97%) | ||
| PBP1 | 455..>600 | CDD:227507 | 138/144 (96%) | ||
| LsmAD | 510..571 | CDD:399606 | 60/60 (100%) | ||
| PRK12323 | <681..888 | CDD:237057 | 192/206 (93%) | ||
| PAM2 | 1024..1038 | CDD:399847 | 13/13 (100%) | ||
| PHA03247 | <1036..1406 | CDD:223021 | 357/369 (97%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C83690736 | |
| Domainoid | 1 | 1.000 | 816 | 1.000 | Domainoid score | I2539 |
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| HGNC | 1 | 1.500 | - | - | ||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H2234 | |
| Inparanoid | 1 | 1.050 | 2091 | 1.000 | Inparanoid score | I1274 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG54638 | |
| OrthoDB | 1 | 1.010 | - | - | D121375at7742 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0001866 | |
| OrthoInspector | 1 | 1.000 | - | - | oto138535 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_114721 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR12854 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X8608 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 16 | 16.410 | |||||