DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ATXN2 and Atxn2

DIOPT Version :9

Sequence 1:NP_001359503.1 Gene:ATXN2 / 6311 HGNCID:10555 Length:1155 Species:Homo sapiens
Sequence 2:NP_033151.2 Gene:Atxn2 / 20239 MGIID:1277223 Length:1286 Species:Mus musculus


Alignment Length:1160 Identity:1056/1160 - (91%)
Similarity:1096/1160 - (94%) Gaps:29/1160 - (2%)


- Green bases have known domain annotations that are detailed below.


Human     1 MSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSAT 65
            ||||||.|                     |||.|..||||| |||:||.|||: |::..|:|...
Mouse   151 MSLKPQPQ---------------------PPAPATGRKPGG-GLLSSPGAAPA-SAAVTSASVVP 192

Human    66 APSSVVAATS---GGGRPGLGRGRNSNKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNG 127
            ||::.||::|   |||||||||||||:|||||.||||||||||:|||||||||||||||||||||
Mouse   193 APAAPVASSSAAAGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNG 257

Human   128 GIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYAKRDA 192
            ||||||||||||||||||||||||||||||||||||||||:||||||||||||||.|||||:|||
Mouse   258 GIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESVLFKCSDFVVVQFKDTDSSYARRDA 322

Human   193 FTDSAISAKVNGEHKEKDLEPWDAGELTANEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDS 257
            |||||:|||||||||||||||||||||||:|||| ||||||||||||||||||||||||||||||
Mouse   323 FTDSALSAKVNGEHKEKDLEPWDAGELTASEELE-LENDVSNGWDPNDMFRYNEENYGVVSTYDS 386

Human   258 SLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNSSERE 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|:||
Mouse   387 SLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDRE 451

Human   323 GHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVN 387
            ||..|||:|||||||||||||:|||||||:||||||||.||||||:.|||||||||:||||||||
Mouse   452 GHGPNTRDNKYIPPGQRNREVLSWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNAGSDQRVVN 516

Human   388 GGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMP 452
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse   517 GGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMP 581

Human   453 KRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHNPPSEAATPPVARTSPSGGTWSSVV 517
            ||||||||||||||||||||||||||||||:||||||||||||||||.||||||||:||||||||
Mouse   582 KRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVV 646

Human   518 SGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASPQAGIIPTEAVAMPIPAASPTPASPASNRAVTP 582
            ||||||||||||||||||:||||:|||||||||||||||.|||:||:|||||||||||||||:||
Mouse   647 SGVPRLSPKTHRPRSPRQSSIGNSPSGPVLASPQAGIIPAEAVSMPVPAASPTPASPASNRALTP 711

Human   583 SSEAKDSRLQDQRQNSPAGNKENIKPNETSPSFSKAENKGISPVVSEHRKQIDDLKKFKNDFRLQ 647
            |.|||||||||||||||||:|||:|.:|||||||||:|||:||||||||||||||||||||||||
Mouse   712 SIEAKDSRLQDQRQNSPAGSKENVKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQ 776

Human   648 PSSTSESMDQLLNKNREGEKSRDLIKDKIEPSAKDSFIE--NSSSNCTSGSSKPNSPSISPSILS 710
            ||||||||||||:|||||||||||||||.|.|||||||:  :|||||||||||.||||||||:||
Mouse   777 PSSTSESMDQLLSKNREGEKSRDLIKDKTEASAKDSFIDSSSSSSNCTSGSSKTNSPSISPSMLS 841

Human   711 NTEHKRGPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTP 775
            |.||||||||||||||||||||||||||:|||||..|||||||||||||||||||||||||||||
Mouse   842 NAEHKRGPEVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFSQPKPSTTP 906

Human   776 TSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAG 840
            |||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Mouse   907 TSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAG 971

Human   841 KVPNMPQQRQDQHHQSAMMHPASAAGPPIAATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHP 905
            ||||||||||||||||.||||||||||||.|||||||||||||||||||||||||||||||||||
Mouse   972 KVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHP 1036

Human   906 HVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGS 970
            |||||||||||||||||.|||||||||||.|:|||||||||||||||||||||||||||||||||
Mouse  1037 HVYSPVIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMYACPKLPYNKETSPSFYFAISTGS 1101

Human   971 LAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAI 1035
            ||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse  1102 LAQQYAHPNAALHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAI 1166

Human  1036 YHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPS 1100
            ||||||||||||||||||||||:||||||||||||||||||||||.|||||||||||||||||||
Mouse  1167 YHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPS 1231

Human  1101 HPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL 1155
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse  1232 HPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL 1286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATXN2NP_001359503.1 SM-ATX 105..181 CDD:373069 73/75 (97%)
PBP1 194..>339 CDD:227507 136/144 (94%)
LsmAD 249..310 CDD:369058 60/60 (100%)
PRK12323 <408..599 CDD:237057 180/190 (95%)
PAM2 750..765 CDD:336618 14/14 (100%)
PHA03247 <769..1087 CDD:223021 308/317 (97%)
Atxn2NP_033151.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..85
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 111..178 21/48 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 197..224 19/26 (73%)
SM-ATX 237..306 CDD:291131 67/68 (99%)
LsmAD 378..439 CDD:284215 60/60 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 428..925 456/496 (92%)
PAM2 880..896 CDD:284542 15/15 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1111..1191 77/79 (97%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C83967342
Domainoid 1 1.000 807 1.000 Domainoid score I2791
eggNOG 00.000 Not matched by this tool.
HGNC 1 1.500 - -
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2234
Inparanoid 1 1.050 2309 1.000 Inparanoid score I1117
Isobase 00.000 Not matched by this tool.
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG54638
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001866
OrthoInspector 1 1.000 - - oto122330
orthoMCL 1 0.900 - - OOG6_114721
Panther 1 1.100 - - LDO PTHR12854
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2220
SonicParanoid 1 1.000 - - X8608
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1515.430

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