Sequence 1: | NP_002948.1 | Gene: | RXRA / 6256 | HGNCID: | 10477 | Length: | 462 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001259168.1 | Gene: | usp / 31165 | FlyBaseID: | FBgn0003964 | Length: | 508 | Species: | Drosophila melanogaster |
Alignment Length: | 486 | Identity: | 210/486 - (43%) |
---|---|---|---|
Similarity: | 276/486 - (56%) | Gaps: | 88/486 - (18%) |
- Green bases have known domain annotations that are detailed below.
Human 51 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 115
Human 116 VLKV-------PAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRD 173
Human 174 NKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGK------------------------- 213
Human 214 --------------DRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 264
Human 265 -----VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDG 323
Human 324 --------------------------ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQM 362
Human 363 DKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRS 427
Human 428 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP 458 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RXRA | NP_002948.1 | Modulating. /evidence=ECO:0000250 | 1..134 | 21/89 (24%) | |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..107 | 14/55 (25%) | |||
Nuc_recep-AF1 | 17..126 | CDD:403126 | 19/81 (23%) | ||
NR_DBD_RXR | 133..209 | CDD:143514 | 65/75 (87%) | ||
Nuclear localization signal. /evidence=ECO:0000269|PubMed:12145331 | 160..165 | 4/4 (100%) | |||
Hinge | 201..224 | 13/61 (21%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 206..228 | 10/60 (17%) | |||
NR_LBD_RXR_like | 229..440 | CDD:132741 | 108/242 (45%) | ||
Required for nuclear export. /evidence=ECO:0000269|PubMed:15509776 | 348..368 | 8/19 (42%) | |||
usp | NP_001259168.1 | NR_DBD_RXR | 102..178 | CDD:143514 | 65/75 (87%) |
NR_LBD_RXR_like | 237..480 | CDD:132741 | 108/242 (45%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C165144373 | |
Domainoid | 1 | 1.000 | 189 | 1.000 | Domainoid score | I3290 |
eggNOG | 1 | 0.900 | - | - | E33208_3BA8J | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H2220 | |
Inparanoid | 1 | 1.050 | 366 | 1.000 | Inparanoid score | I2165 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG45637 | |
OrthoDB | 1 | 1.010 | - | - | D389616at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001500 | |
OrthoInspector | 1 | 1.000 | - | - | otm42314 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103349 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR24083 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X118 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
15 | 14.770 |