DRSC/TRiP Functional Genomics Resources

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Protein Alignment CLIP1 and Tbcb

DIOPT Version :10

Sequence 1:NP_001376220.1 Gene:CLIP1 / 6249 HGNCID:10461 Length:2148 Species:Homo sapiens
Sequence 2:NP_611425.1 Gene:Tbcb / 37244 FlyBaseID:FBgn0034451 Length:244 Species:Drosophila melanogaster


Alignment Length:109 Identity:40/109 - (36%)
Similarity:52/109 - (47%) Gaps:9/109 - (8%)


- Green bases have known domain annotations that are detailed below.


Human   185 ISNLTKTASESISNLSE-----AGSIKKGERELKIGDR--VLVGG--TKAGVVRFLGETDFAKGE 240
            |:.:.|...|.:....|     |..|:|......:|.|  |.|.|  |:.|.:|:.|..:...|.
  Fly   126 INRMGKYNDEEMQQAEEKKRLQAEEIQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLEGKSGH 190

Human   241 WCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFP 284
            :.|||.|||||||:|:..|..||.|.|.||.|.....||...||
  Fly   191 FIGVEYDEPLGKNNGSFGGKAYFTCAPNYGGFVSPLSVTVGDFP 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP1NP_001376220.1 CAP_GLY 60..124 CDD:460154
CAP_GLY 214..278 CDD:460154 29/67 (43%)
Smc <352..>936 CDD:440809
SMC_prok_B 658..1545 CDD:274008
SMC_prok_B 1323..>2012 CDD:274008
CLIP1_ZNF 2086..2103 CDD:465212
CLIP1_ZNF 2126..2142 CDD:465212
TbcbNP_611425.1 Ubiquitin_2 13..93 CDD:405277
CAP_GLY 160..225 CDD:460154 29/64 (45%)
Blue background indicates that the domain is not in the aligned region.

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