DRSC/TRiP Functional Genomics Resources

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Protein Alignment RPS28 and RpS28b

DIOPT Version :9

Sequence 1:NP_001022.1 Gene:RPS28 / 6234 HGNCID:10418 Length:69 Species:Homo sapiens
Sequence 2:NP_001285059.1 Gene:RpS28b / 31897 FlyBaseID:FBgn0030136 Length:65 Species:Drosophila melanogaster


Alignment Length:63 Identity:50/63 - (79%)
Similarity:57/63 - (90%) Gaps:0/63 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
            :|:..|||.|||||||||||||||:|||:.:.:|.|||||||||||||:||||||||||||||
  Fly     3 KPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTLLESEREARRLR 65

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RPS28NP_001022.1 S1_S28E 10..69 CDD:239904 47/58 (81%)
RpS28bNP_001285059.1 S1_S28E 8..65 CDD:239904 47/56 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165160216
Domainoid 1 1.000 101 1.000 Domainoid score I6974
eggNOG 1 0.900 - - E1_COG2053
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68150
Inparanoid 1 1.050 103 1.000 Inparanoid score I4968
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53935
OrthoDB 1 1.010 - - D1578965at2759
OrthoFinder 1 1.000 - - FOG0002156
OrthoInspector 1 1.000 - - otm41207
orthoMCL 1 0.900 - - OOG6_101185
Panther 1 1.100 - - LDO PTHR10769
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1243
SonicParanoid 1 1.000 - - X1439
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1514.840

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