DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RPLP1 and rplp-1

DIOPT Version :10

Sequence 1:NP_000994.1 Gene:RPLP1 / 6176 HGNCID:10372 Length:114 Species:Homo sapiens
Sequence 2:NP_001380045.1 Gene:rplp-1 / 171766 WormBaseID:WBGene00004409 Length:111 Species:Caenorhabditis elegans


Alignment Length:119 Identity:74/119 - (62%)
Similarity:85/119 - (71%) Gaps:13/119 - (10%)


- Green bases have known domain annotations that are detailed below.


Human     1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65
            |||..||||:|:||||.||||.:|.:||..|:|||.|..||:|||||||||..|::.:||.:|.:
 Worm     1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSS 65

Human    66 G---GPAP-AAGAAPAGGPAPSTAAAPAEEKKVEAKKEE-SEESDDDMGFGLFD 114
            |   |||| ||.||||.|     .||||.|.|   |||| .|||||||||||||
 Worm    66 GAGSGPAPAAAAAAPAAG-----GAAPAAETK---KKEEPKEESDDDMGFGLFD 111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RPLP1NP_000994.1 Ribosomal_P1 6..>63 CDD:100109 35/56 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..114 30/46 (65%)
rplp-1NP_001380045.1 Ribosomal_P1 6..110 CDD:100109 68/111 (61%)

Return to query results.
Submit another query.