DRSC/TRiP Functional Genomics Resources

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Protein Alignment RPL6 and rpl6

DIOPT Version :10

Sequence 1:NP_000961.2 Gene:RPL6 / 6128 HGNCID:10362 Length:288 Species:Homo sapiens
Sequence 2:NP_001003844.2 Gene:rpl6 / 336727 ZFINID:ZDB-GENE-030131-8671 Length:265 Species:Danio rerio


Alignment Length:260 Identity:197/260 - (75%)
Similarity:222/260 - (85%) Gaps:7/260 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    36 KPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVL-------ATVT 93
            |.|..:.|.||||.|||||||||||||::|:||||||..|..:|||||.|||.:       .|..
Zfish     6 KKKVARKHGSRNPELVRGIGRYSRSAMFARRAMYKRKTKAPVTKVEKKIKEKKVKQKSKNPTTAI 70

Human    94 KPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHR 158
            |.||||||||||||||||||||||||||.|||.|||.|.||||.||||.:|||||:||:||||||
Zfish    71 KTVGGDKNGGTRVVKLRKMPRYYPTEDVRRKLRSHGIKAFSQHRRKLRKTITPGTVLIMLTGRHR 135

Human   159 GKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR 223
            ||||||||||.||||||||||.:|||||||.||||.|||:||:|||.:|||:.|||:||||||||
Zfish   136 GKRVVFLKQLDSGLLLVTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKKKKLR 200

Human   224 KPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
            ||:||||||||||||||::|||||.||||||||:||.||.:|||:|||||:|:|:||:|||||||
Zfish   201 KPKHQEGEIFDTEKEKYQLTEQRKADQKAVDSQLLPLIKKVPQLRGYLRSMFSLSNGVYPHKLVF 265

Human   289  288
            Zfish   266  265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RPL6NP_000961.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..48 5/11 (45%)
Ribosomal_L6e_N 36..95 CDD:427554 37/65 (57%)
KOW_RPL6 136..288 CDD:240520 121/151 (80%)
rpl6NP_001003844.2 Ribosomal_L6e_N 6..>48 CDD:427554 28/41 (68%)
KOW_RPL6 113..265 CDD:240520 121/151 (80%)

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