DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ROBO1 and Dscam4

DIOPT Version :10

Sequence 1:XP_011532278.1 Gene:ROBO1 / 6091 HGNCID:10249 Length:1654 Species:Homo sapiens
Sequence 2:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster


Alignment Length:45 Identity:12/45 - (26%)
Similarity:21/45 - (46%) Gaps:3/45 - (6%)


- Green bases have known domain annotations that are detailed below.


Human   177 SNIDTTIEGTSDDLTVVDAASLRRQIIKLNRRLQLLEEENKERAK 221
            |.|.||.:..|..:.:.|....||.:.::.|...::   ||..:|
  Fly    37 SYIMTTSDQDSSMVVLEDVVKGRRLLTRVVRSGAVV---NKSSSK 78

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ROBO1XP_011532278.1 IgC_1_Robo 68..166 CDD:409490
Ig strand A 68..72 CDD:409490
Ig strand A' 75..80 CDD:409490
Ig strand B 84..92 CDD:409490
Ig strand C 98..103 CDD:409490
Ig strand C' 106..108 CDD:409490
Ig strand D 119..122 CDD:409490
Ig strand E 125..131 CDD:409490
Ig strand F 143..151 CDD:409490
Ig strand G 154..166 CDD:409490
IgI_2_Robo 173..258 CDD:409389 12/45 (27%)
Ig strand A 173..176 CDD:409389
Ig strand A' 178..182 CDD:409389 1/3 (33%)
Ig strand B 186..193 CDD:409389 1/6 (17%)
Ig strand C 201..206 CDD:409389 0/4 (0%)
Ig strand C' 208..211 CDD:409389 0/2 (0%)
Ig strand D 217..221 CDD:409389 1/3 (33%)
Ig strand E 223..229 CDD:409389
Ig strand F 236..244 CDD:409389
Ig strand G 247..258 CDD:409389
IgI_3_Robo 265..347 CDD:409390
Ig strand A 265..268 CDD:409390
Ig strand A' 270..274 CDD:409390
Ig strand B 277..286 CDD:409390
Ig strand C 292..297 CDD:409390
Ig strand C' 300..303 CDD:409390
Ig strand D 306..311 CDD:409390
Ig strand E 312..319 CDD:409390
Ig strand F 326..334 CDD:409390
Ig strand G 337..347 CDD:409390
IgI_4_Robo 355..452 CDD:409391
Ig strand A 355..359 CDD:409391
Ig strand A' 361..365 CDD:409391
Ig strand B 371..379 CDD:409391
Ig strand C 382..389 CDD:409391
Ig strand C' 391..394 CDD:409391
Ig strand D 407..412 CDD:409391
Ig strand E 414..421 CDD:409391
Ig strand F 427..436 CDD:409391
FN3 428..882 CDD:442628
Ig strand G 438..449 CDD:409391
IgI_5_Robo 459..545 CDD:409544
Ig strand A 459..462 CDD:409544
Ig strand A' 466..469 CDD:409544
Ig strand B 475..482 CDD:409544
Ig strand C 488..493 CDD:409544
Ig strand C' 495..497 CDD:409544
Ig strand D 504..508 CDD:409544
Ig strand E 511..516 CDD:409544
Ig strand F 524..532 CDD:409544
Ig strand G 535..545 CDD:409544
FN3 564..650 CDD:238020
Dscam4NP_001261571.1 Ig 31..124 CDD:472250 12/45 (27%)
Ig strand B 50..54 CDD:409353 0/3 (0%)
Ig strand C 63..66 CDD:409353 0/2 (0%)
Ig strand E 82..86 CDD:409353
Ig strand F 102..107 CDD:409353
Ig strand G 115..119 CDD:409353
Ig 235..326 CDD:472250
Ig strand B 253..257 CDD:409353
Ig strand C 266..270 CDD:409353
Ig strand E 292..296 CDD:409353
Ig strand F 306..311 CDD:409353
Ig strand G 319..322 CDD:409353
IgC2_3_Dscam 329..417 CDD:409549
Ig strand A 330..335 CDD:409549
Ig strand A' 338..342 CDD:409549
Ig strand B 345..355 CDD:409549
Ig strand C 360..366 CDD:409549
Ig strand C' 367..370 CDD:409549
Ig strand E 383..389 CDD:409549
Ig strand F 396..404 CDD:409549
Ig strand G 407..417 CDD:409549
IgI_4_Dscam 422..516 CDD:409548
Ig strand A' 430..434 CDD:409548
Ig strand B 437..446 CDD:409548
Ig strand C 451..457 CDD:409548
Ig strand C' 459..462 CDD:409548
Ig strand D 467..475 CDD:409548
Ig strand E 479..488 CDD:409548
Ig strand F 495..503 CDD:409548
Ig strand G 506..516 CDD:409548
IgI_5_Dscam 520..607 CDD:409550
Ig strand A 520..522 CDD:409550
Ig strand A' 527..531 CDD:409550
Ig strand B 534..541 CDD:409550
Ig strand C 548..554 CDD:409550
Ig strand C' 555..557 CDD:409550
Ig strand D 564..568 CDD:409550
Ig strand E 571..577 CDD:409550
Ig strand F 585..593 CDD:409550
Ig strand G 597..607 CDD:409550
Ig 610..703 CDD:472250
Ig strand B 629..633 CDD:409353
Ig strand C 643..647 CDD:409353
Ig strand E 669..673 CDD:409353
Ig strand F 683..688 CDD:409353
Ig strand G 696..699 CDD:409353
IgI_7_Dscam 706..801 CDD:409546
Ig strand A 706..710 CDD:409546
Ig strand A' 715..719 CDD:409546
Ig strand B 722..731 CDD:409546
Ig strand C 737..743 CDD:409546
Ig strand C' 749..752 CDD:409546
Ig strand D 760..763 CDD:409546
Ig strand E 766..772 CDD:409546
Ig strand F 779..787 CDD:409546
Ig strand G 792..801 CDD:409546
Ig 804..889 CDD:472250
Ig strand B 822..826 CDD:409353
Ig strand C 835..839 CDD:409353
FN3 <850..1254 CDD:442628
Ig strand F 882..887 CDD:409353
FN3 906..999 CDD:238020
fn3 1117..1203 CDD:394996
FN3 1185..>1580 CDD:442628
FN3 1405..1494 CDD:238020
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.