DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kcnv1 and Shawl

DIOPT Version :9

Sequence 1:NP_067729.1 Gene:Kcnv1 / 60326 RGDID:621264 Length:503 Species:Rattus norvegicus
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:541 Identity:138/541 - (25%)
Similarity:217/541 - (40%) Gaps:165/541 - (30%)


- Green bases have known domain annotations that are detailed below.


  Rat    44 LTVNVGGSRFVLSQQALSCFPHTRLGKLAVVVASYRRLGALAAAPSPLELCDDANPVDNEYFFDR 108
            :.:||.|.|:...:..|...|.|||.:|...:|:|                   :||.|||||||
  Fly     7 IILNVSGIRYETYKATLKKIPATRLSRLTEALANY-------------------DPVLNEYFFDR 52

  Rat   109 SSQAFRYVLHYYRTGRLHVMEQLCALSFLQEIQYWGIDELSIDSCCRDRYFRRKELSETLDF--K 171
            ....|..:|:|||||:||....:|...|.:|:::||:|...::.||...|...::...||..  |
  Fly    53 HPGVFTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDK 117

  Rat   172 KDTDDQESQHES-------EQDFSQGP--C-PTVRQKLWDILEKPGSSTAARIFGVISIIFVAVS 226
            .|.::::...|.       |:..|.|.  | ..::.|:|.:.::|.|||.|:|...:|:.|:.||
  Fly   118 LDIENEKPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVS 182

  Rat   227 IVNMALMS--------------------------------------------------------- 234
            :::..|.:                                                         
  Fly   183 VISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRV 247

  Rat   235 ------------------------------------------------------AELSWLNL--- 242
                                                                  .:..|:..   
  Fly   248 TNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQ 312

  Rat   243 --QLLEILEYVCISWFTGEFILRFLCVKDRCHFLRKVPNIIDLLAILPFYITLLVESLSGSHTTQ 305
              :....:|.||..||..|.|:|.:...:...|::...||||..|.|.||             |.
  Fly   313 PHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY-------------TD 364

  Rat   306 ELENVGR---LVQVLRLLRALRMLKLGRHSTGLRSLGMTITQCYEEVGLLLLFLSVGISIFSTIE 367
            .::.:|.   |::...::|.:|:.||.|||.|||.|..|.....:|:.||:.||.:||..|:::.
  Fly   365 VMQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLA 429

  Rat   368 YFAE--QSIPDTTFTSVPCAWWWATTSMTTVGYGDIRPDTTTGKIVAFMCILSGILVLALPIAII 430
            |:||  |..||..|.|:|...|||..:||||||||:.|.|..|..|..:|.|:|:|.:|||:.:|
  Fly   430 YYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVI 494

  Rat   431 NDRFSACYFTLKLKEAAVRQR 451
            ...||..|...:.:....::|
  Fly   495 VSNFSMFYSHTQARSKLPKKR 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kcnv1NP_067729.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
BTB_POZ 44..163 CDD:365784 39/118 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..192 6/29 (21%)
Ion_trans 212..438 CDD:395416 82/346 (24%)
Selectivity filter. /evidence=ECO:0000250 395..400 4/4 (100%)
ShawlNP_001097131.2 BTB 7..99 CDD:197585 37/110 (34%)
BTB_2 7..97 CDD:280393 36/108 (33%)
Ion_trans 307..506 CDD:278921 75/211 (36%)
Ion_trans_2 <449..499 CDD:285168 23/49 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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