DRSC/TRiP Functional Genomics Resources

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Protein Alignment RGR and rgra

DIOPT Version :10

Sequence 1:NP_002912.2 Gene:RGR / 5995 HGNCID:9990 Length:295 Species:Homo sapiens
Sequence 2:NP_001017877.1 Gene:rgra / 550575 ZFINID:ZDB-GENE-040924-6 Length:295 Species:Danio rerio


Alignment Length:290 Identity:164/290 - (56%)
Similarity:203/290 - (70%) Gaps:4/290 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGI 65
            |..:..||.||.|.:|.::|..||||.|.|..||.:|:.:|.|..|||||.:.||.|||:||.||
Zfish     1 MVTSYPLPEGFSEFDVFSLGSCLLVEGLLGFFLNAVTVIAFLKIRELRTPSNFLVFSLAMADMGI 65

Human    66 SLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTRSQLAWN 130
            |.||.|||.||.||.    |||||||||.||||||:||||||...|||||.|||.||||::|.|:
Zfish    66 STNATVAAFSSFLRY----WPYGSDGCQTHGFQGFMTALASIHFIAAIAWDRYHQYCTRTKLQWS 126

Human   131 SAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFI 195
            ||::||||.||.:|||||:||.|||.||||||.|||||||||||||:.|:|..||.||..:.:|:
Zfish   127 SAITLVLFTWLFTAFWAAMPLFGWGEYDYEPLRTCCTLDYSKGDRNYVSYLIPMSIFNMGIQVFV 191

Human   196 TITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKM 260
            .::||..:::|..|:|..:.|...|.:|:|..||||.||..||.:.:.|.:||||:|:..::||.
Zfish   192 VLSSYQSIDKKFKKTGQAKFNCGTPLKTMLFCWGPYGILAFYAAVENATLVSPKLRMIAPILAKT 256

Human   261 VPTINAINYALGNEMVCRGIWQCLSPQKRE 290
            .||.|...||||||....||||.|:.||.|
Zfish   257 SPTFNVFVYALGNENYRGGIWQLLTGQKIE 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RGRNP_002912.2 7tmA_Retinal_GPR 17..281 CDD:320200 150/263 (57%)
TM helix 1 18..44 CDD:320200 11/25 (44%)
TM helix 2 51..77 CDD:320200 16/25 (64%)
TM helix 3 92..122 CDD:320200 22/29 (76%)
TM helix 4 130..150 CDD:320200 13/19 (68%)
TM helix 5 177..206 CDD:320200 9/28 (32%)
TM helix 6 208..238 CDD:320200 12/29 (41%)
TM helix 7 248..273 CDD:320200 12/24 (50%)
rgraNP_001017877.1 7tmA_Retinal_GPR 17..276 CDD:320200 149/262 (57%)
TM helix 1 18..44 CDD:320200 11/25 (44%)
TM helix 2 51..77 CDD:320200 16/25 (64%)
TM helix 3 88..118 CDD:320200 22/29 (76%)
TM helix 4 126..146 CDD:320200 13/19 (68%)
TM helix 5 173..202 CDD:320200 9/28 (32%)
TM helix 6 204..234 CDD:320200 12/29 (41%)
TM helix 7 244..269 CDD:320200 12/24 (50%)

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