DRSC/TRiP Functional Genomics Resources

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Protein Alignment RET and SLA1

DIOPT Version :10

Sequence 1:NP_066124.1 Gene:RET / 5979 HGNCID:9967 Length:1114 Species:Homo sapiens
Sequence 2:NP_009546.1 Gene:SLA1 / 852276 SGDID:S000000103 Length:1244 Species:Saccharomyces cerevisiae


Alignment Length:255 Identity:46/255 - (18%)
Similarity:88/255 - (34%) Gaps:91/255 - (35%)


- Green bases have known domain annotations that are detailed below.


Human   901 EEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEI---------VTLGGN-----P 951
            |||.|...|..         .::.:|.|.|:...|:    :.||         :::|.|     |
Yeast   231 EEDDYYYNSNS---------NNVGNHEYNTEYHSWN----VTEIEGRKKKKAKLSIGNNKINFIP 282

Human   952 YPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWK--------------------------Q 990
            ..|.|.|...:      ::...||..:.|:...:..::                          :
Yeast   283 QKGTPHEWSID------KLVSYDNEKKHMFLEFVDPYRSLELHTGNTTTCEEIMNIIGEYKGASR 341

Human   991 EPDKRPVFADISKDLEKMMVKRRDYL-----DLAASTPSDSLIYDDGLSEE--ETPLVDCNNAPL 1048
            :|..|.|  :::...:|..:.:.|::     :|...:.....|.||..|::  ...|||...:.|
Yeast   342 DPGLREV--EMASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGL 404

Human  1049 PRALPSTWIENKLYGMSDPNWPGESPV-PLTRADGTNTGFPRYPNDSVYANWMLSPSAAK 1107
               :|:.:||               || .....:.|.:|..:    |:..|:..|||.::
Yeast   405 ---VPAQFIE---------------PVRDKKHTESTASGIIK----SIKKNFTKSPSRSR 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RETNP_066124.1 RET_CLD1 29..154 CDD:465485
Cadherin-like region 1 (CLD1). /evidence=ECO:0000305|PubMed:11445581 29..153
Cadherin 172..261 CDD:394985
Cadherin-like region 3 (CLD3). /evidence=ECO:0000305|PubMed:11445581 265..379
RET_CLD3 265..379 CDD:465516
RET_CLD4 404..506 CDD:465517
Cadherin-like region 4 (CLD4). /evidence=ECO:0000305|PubMed:11445581 405..506
PTKc_RET 723..1012 CDD:173631 24/150 (16%)
SLA1NP_009546.1 SH3_Sla1p_1 7..64 CDD:212707
SH3 73..127 CDD:473055
SH3_Sla1p_3 356..412 CDD:212709 14/73 (19%)
SHD1 489..554 CDD:427630
SAM_SLA1_fungal 655..716 CDD:188931
DUF5585 <723..1040 CDD:465521
Med15 967..>1230 CDD:312941
Blue background indicates that the domain is not in the aligned region.

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