DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RELA and Rel

DIOPT Version :9

Sequence 1:NP_068810.3 Gene:RELA / 5970 HGNCID:9955 Length:551 Species:Homo sapiens
Sequence 2:NP_477094.1 Gene:Rel / 41087 FlyBaseID:FBgn0014018 Length:971 Species:Drosophila melanogaster


Alignment Length:385 Identity:125/385 - (32%)
Similarity:180/385 - (46%) Gaps:63/385 - (16%)


- Green bases have known domain annotations that are detailed below.


Human     1 MDELFPLIFPA--EPAQASG---------------PYVEIIEQPKQRGMRFRYKCEGRSA-GSIP 47
            ||..:.:..||  .|:|..|               |.:.|:|||.:: .|||||.|.... ||:.
  Fly   115 MDHQYFVPAPATVPPSQNFGYHQNGLASDGDIKHVPQLRIVEQPVEK-FRFRYKSEMHGTHGSLN 178

Human    48 GERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHEL-VGKDCRDGFYEAELCPDRCIH 111
            |..|..|.||.|.:.:..|.||..:|.||...: ...||.|:| |.||.||      :|....:|
  Fly   179 GANSKRTPKTFPEVTLCNYDGPAVIRCSLFQTN-LDSPHSHQLVVRKDDRD------VCDPHDLH 236

Human   112 ---------SFQNLGI-----------QCVKKRDLEQAISQRIQTNNNPFQ---VPIEEQRGDYD 153
                     .|.|:||           .|.||:|.......|.:.::...|   ...|.:..|.:
  Fly   237 VSKERGYVAQFINMGIIHTAKKYIFEELCKKKQDRLVFQMNRRELSHKQLQELHQETEREAKDMN 301

Human   154 LNAVRLCFQVTVRDPSGR--PLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLC 216
            ||.|||||:....:.:|.  || .|||.|:.|.:.::..|.||:|.|:::.:|..:|.||:.||.
  Fly   302 LNQVRLCFEAFKIEDNGAWVPL-APPVYSNAINNRKSAQTGELRIVRLSKPTGGVMGNDELILLV 365

Human   217 DKVQKEDIEVYFTGPG------WEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRP 275
            :||.|::|:|.|....      |||...|.::|||.|.|||.:||||.|..:...|.|.::|.||
  Fly   366 EKVSKKNIKVRFFEEDEDGETVWEAYAKFRESDVHHQYAIVCQTPPYKDKDVDREVNVYIELIRP 430

Human   276 SDRELSEP-MEFQYLPDTDDRHRIEEKRKRTYETFKSIMKKSPFSGPTDPRPPPRRIAVP 334
            ||.|.|.| :.|:|.|.:   ..:..||:||..:..|....:..|..:...|....:|.|
  Fly   431 SDDERSFPALPFRYKPRS---VIVSRKRRRTGSSANSSSSGTESSNNSLDLPKTLGLAQP 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RELANP_068810.3 RHD-n_RelA 19..187 CDD:143645 63/194 (32%)
IPT_NFkappaB 194..290 CDD:238582 43/102 (42%)
Nuclear localization signal. /evidence=ECO:0000255 301..304 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..348 5/26 (19%)
Transcriptional activation domain 3. /evidence=ECO:0000250|UniProtKB:Q04207 342..389
Transcriptional activation domain 1. /evidence=ECO:0000269|PubMed:1732726 415..476
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 506..530
Transcriptional activation domain 2. /evidence=ECO:0000250|UniProtKB:Q04207 520..551
9aaTAD. /evidence=ECO:0000255 536..544
RelNP_477094.1 RHD-n_Relish 150..336 CDD:143644 63/194 (32%)
IPT_NFkappaB 343..446 CDD:238582 43/102 (42%)
ANK 638..766 CDD:238125
ANK repeat 640..671 CDD:293786
Ank_4 641..691 CDD:290365
ANK repeat 673..708 CDD:293786
Ank_2 678..775 CDD:289560
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24169
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
43.980

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