DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBMY1A1 and exc-7

DIOPT Version :9

Sequence 1:NP_005049.1 Gene:RBMY1A1 / 5940 HGNCID:9912 Length:496 Species:Homo sapiens
Sequence 2:NP_496057.1 Gene:exc-7 / 174506 WormBaseID:WBGene00001368 Length:456 Species:Caenorhabditis elegans


Alignment Length:71 Identity:24/71 - (33%)
Similarity:45/71 - (63%) Gaps:0/71 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74
            ||:..|:.:|::.:|..:|.:.|.|..|.:::|.|.:.:|:||::..|..:|.||...:||.:|.
 Worm   376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLA 440

Human    75 GKAIKV 80
            ||.::|
 Worm   441 GKTLQV 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBMY1A1NP_005049.1 RRM <1..189 CDD:223796 24/71 (34%)
RRM_RBMX_like 7..85 CDD:240828 24/71 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..349 1/3 (33%)
RBM1CTR 174..218 CDD:285341
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 452..496
exc-7NP_496057.1 ELAV_HUD_SF 39..455 CDD:273741 24/71 (34%)
RRM1_Hu 41..118 CDD:241094
RRM2_Hu 128..206 CDD:241096
RRM3_Hu 373..449 CDD:240823 24/71 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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