DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBMS2 and Rbms2

DIOPT Version :9

Sequence 1:XP_006719604.1 Gene:RBMS2 / 5939 HGNCID:9909 Length:477 Species:Homo sapiens
Sequence 2:NP_062685.2 Gene:Rbms2 / 56516 MGIID:1861776 Length:383 Species:Mus musculus


Alignment Length:355 Identity:300/355 - (84%)
Similarity:310/355 - (87%) Gaps:32/355 - (9%)


- Green bases have known domain annotations that are detailed below.


Human     1 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSS----SGSNGNDQLSKTNLYIR 61
            |||||||||||||||||:||||.||  |||||||||.|||||||    .||.|||||||||||||
Mouse     1 MLLSVTSRPGISTFGYNKNNKKLYV--AQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIR 63

Human    62 GLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 126
            |||||||||||||||||||||||||||||||||||||||||||||||:|||||||||||||||||
Mouse    64 GLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQM 128

Human   127 AKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAI 191
            ||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Mouse   129 AKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAI 193

Human   192 ITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNADMGVMALTYDPTTA 256
            |||||||||||||||.|||||||||||||||||||:||::||||||||||.|||.||||||||.|
Mouse   194 ITHFNGKYIKTPPGVAAPSDPLLCKFADGGPKKRQSQGRYVQNGRAWPRNGDMGGMALTYDPTAA 258

Human   257 LQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQVPNPSWMHHHSYLMQPSGSVL 321
            ||||||.|||:|..:||||||||:|||.|||||||                          ||||
Mouse   259 LQNGFYAAPYSIAHSRMLAQSALAPYLPSPVSSYQ--------------------------GSVL 297

Human   322 TPGMDHPISLQPASMMGPLTQQLGHLSLSS 351
            |||||||:||||||||||||||||||||:|
Mouse   298 TPGMDHPLSLQPASMMGPLTQQLGHLSLNS 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBMS2XP_006719604.1 RRM1_MSSP1 49..134 CDD:240914 83/84 (99%)
RRM2_MSSP2 135..220 CDD:240918 82/84 (98%)
Rbms2NP_062685.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..56 20/27 (74%)
RRM_SF 53..136 CDD:388407 81/82 (99%)
RRM2_MSSP2 137..222 CDD:240918 82/84 (98%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 352..383
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 299 1.000 Domainoid score I16327
eggNOG 1 0.900 - - E1_KOG4733
HGNC 1 1.500 - -
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37706
Inparanoid 1 1.050 669 1.000 Inparanoid score I9662
Isobase 00.000 Not matched by this tool.
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG41051
OrthoDB 1 1.010 - - D172820at32523
OrthoFinder 1 1.000 - - FOG0001320
OrthoInspector 1 1.000 - - oto124212
orthoMCL 1 0.900 - - OOG6_110472
Panther 1 1.100 - - LDO PTHR24012
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3067
SonicParanoid 1 1.000 - - X530
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1818.370

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