Protein Alignment RBMS1 and PAB1

DIOPT Version :9

• Sequence 1: XP_005246794.1
• Gene: RBMS1 / 5937
• HGNCID: 9907
• Length: 422
• Species: Homo sapiens
• Sequence 2: NP_011092.1
• Gene: PAB1 / 856912
• SGDID: S000000967
• Length: 577
• Species: Saccharomyces cerevisiae
• Alignment Length: 404
• Identity: 85/404 - (21%)
• Similarity: 143/404 - (35%)
• Gaps: 147/404 - (36%)

Human    62 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQKAVSALKA 125
            ||||::.:...|||:...:|...:|.|||  |.|:|..: |.||:|||:::....|.|||.||..
Yeast   219 TNLYVKNINSETTDEQFQELFAKFGPIVS--ASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 281

Human   126 SGVQAQ----------------------------MAKQQEQDPTNLYISNLPLSMDEQELENMLK 162
            |.:..:                            |||.|   ..||::.||..|:|:::||....
Yeast   282 SELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ---GVNLFVKNLDDSVDDEKLEEEFA 343

Human   163 PFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGG 227
            |:|.:.|.:::|..:|.|:|.||....:.|:....|                 ||
Yeast   344 PYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAI-----------------TE---------- 381

Human   228 QKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI 292
                  .|:.|..|:|.:                             .:||..:.:.::.:
Yeast   382 ------KNQQIVAGKPLY-----------------------------VAIAQRKDVRRSQL---- 407

Human   293 ASPVSAYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLA 357
                 |.|:....:....:.:|....:.:.|         ||..:.|.....|..:......|..
Yeast   408 -----AQQIQARNQMRYQQATAAAAAAAAGM---------PGQFMPPMFYGVMPPRGVPFNGPNP 458

Human   358 QQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVE-------------------EASGQQ 403
            |||:.:. |.....||          ||:.:.....||.:                   :|.|:|
Yeast   459 QQMNPMG-GMPKNGMP----------PQFRNGPVYGVPPQGGFPRNANDNNQFYQQKQRQALGEQ 512

Human   404 ---QVAVETSNDHS 414
               :|:.:|||:.:
Yeast   513 LYKKVSAKTSNEEA 526

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RBMS1	XP_005246794.1	RRM1_MSSP1	55..140	CDD:409900	32/106 (30%)
		RRM2_MSSP1	141..225	CDD:409903	21/83 (25%)
PAB1	NP_011092.1	PABP-1234	38..559	CDD:130689	85/404 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910