DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM3 and NAM8

DIOPT Version :10

Sequence 1:NP_006734.1 Gene:RBM3 / 5935 HGNCID:9900 Length:157 Species:Homo sapiens
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:145 Identity:39/145 - (26%)
Similarity:58/145 - (40%) Gaps:16/145 - (11%)


- Green bases have known domain annotations that are detailed below.


Human     2 SSEEGKLFVGGLNFN-TDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
            |.....:|||.|..| |:.|..|...:.:...|...:|.|:.|..|:|:||:.|||.:...:|:.
Yeast   159 SGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223

Human    66 AMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYGYGYG 130
            .|.|..|:||.|:|               |.....:.:..|..|....|....:..........|
Yeast   224 EMQGVFLNGRAIKV---------------GPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKG 273

Human   131 RSRDYNGRNQGGYDR 145
            :|...||.|..|:.|
Yeast   274 QSFLSNGNNNMGFKR 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM3NP_006734.1 RRM_CIRBP_RBM3 6..85 CDD:409883 27/79 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..157 11/65 (17%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023
RRM2_SECp43_like 162..241 CDD:409781 28/93 (30%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782
Blue background indicates that the domain is not in the aligned region.

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