Protein Alignment RBM3 and sqd

DIOPT Version :9

• Sequence 1: NP_006734.1
• Gene: RBM3 / 5935
• HGNCID: 9900
• Length: 157
• Species: Homo sapiens
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 257
• Identity: 68/257 - (26%)
• Similarity: 86/257 - (33%)
• Gaps: 111/257 - (43%)

Human     4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA-- 66
            ::.|||||||::.|.|:.|.|||..:|.|..:.|..|.:|.|||||.||.|||.|.......|
  Fly    54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADE 118

Human    67 --MNGESLDGRQIRVDH------------------------------------------------ 81
              :|.:.:|.::.:..|
  Fly   119 HIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFIT 183

Human    82 ------------------AGKSA-------------------------RGTRG--GGFGAH---- 97
                              |||..                         ||.||  ||.|.:
  Fly   184 FDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQW 248

Human    98 -GRGRSYSRGGGDQGYGSGRYYDSRPGGY---------GYGYGRSRDYNGRNQGGYDRYSGG 149
             |:|.....|||..|||:|.|.|...|||         |||||...:.||...||.....||
  Fly   249 DGQGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGG 310

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RBM3	NP_006734.1	RRM_CIRBP_RBM3	6..85	CDD:409883	35/148 (24%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	81..157		36/176 (20%)
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	31/70 (44%)
		RRM2_hnRNPD_like	137..211	CDD:240775	3/73 (4%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	1	0.910