DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM3 and usp101

DIOPT Version :10

Sequence 1:NP_006734.1 Gene:RBM3 / 5935 HGNCID:9900 Length:157 Species:Homo sapiens
Sequence 2:NP_593779.1 Gene:usp101 / 2542461 PomBaseID:SPAC19A8.13 Length:261 Species:Schizosaccharomyces pombe


Alignment Length:164 Identity:52/164 - (31%)
Similarity:80/164 - (48%) Gaps:28/164 - (17%)


- Green bases have known domain annotations that are detailed below.


Human     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
            :|:..|:::|.|..:|..|:.:|||..:.||:::.|.:|.|:.|:.|.......||.:|..|..|
pombe   102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLML 166

Human    73 DGRQIRVD-HAGKSARG----TRGGGFGAHGRGRSY----------SRGGGDQGYGS---GRYYD 119
            :||:|.|| ..|::.:|    ..|||.|    ||.|          ||..||.|:..   |.:..
pombe   167 NGRRIVVDVERGRTVKGWLPRKLGGGLG----GRHYTKERPRRERGSRFRGDSGFRGGYRGGFRK 227

Human   120 SRPGGYGYGYGRSRDYNGRNQGGYD------RYS 147
            |..||..:|.|.:|..:..:.||.|      ||:
pombe   228 SSGGGSRFGRGPTRSSHSSDYGGRDSSPKRRRYN 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM3NP_006734.1 RRM_CIRBP_RBM3 6..85 CDD:409883 27/77 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..157 26/90 (29%)
usp101NP_593779.1 U1snRNP70_N 3..91 CDD:432406
RRM_snRNP70 99..188 CDD:409682 28/85 (33%)
Blue background indicates that the domain is not in the aligned region.

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