DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM3 and rbm-3.2

DIOPT Version :9

Sequence 1:NP_006734.1 Gene:RBM3 / 5935 HGNCID:9900 Length:157 Species:Homo sapiens
Sequence 2:NP_493023.1 Gene:rbm-3.2 / 173071 WormBaseID:WBGene00011156 Length:85 Species:Caenorhabditis elegans


Alignment Length:75 Identity:32/75 - (42%)
Similarity:43/75 - (57%) Gaps:0/75 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
            ::||...|.|.|..|.::||..|.:|.|.:|.||||.|.|||.|:.||....|..|:...||...
 Worm     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDF 70

Human    73 DGRQIRVDHA 82
            :||.:||:.|
 Worm    71 NGRALRVNLA 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM3NP_006734.1 RRM_CIRBP_RBM3 6..85 CDD:409883 32/75 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..157 1/2 (50%)
rbm-3.2NP_493023.1 RRM_SF 7..81 CDD:388407 32/74 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100265
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

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