DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ZNF350 and LOC100487768

DIOPT Version :9

Sequence 1:XP_016882583.1 Gene:ZNF350 / 59348 HGNCID:16656 Length:574 Species:Homo sapiens
Sequence 2:XP_031746881.1 Gene:LOC100487768 / 100487768 -ID:- Length:477 Species:Xenopus tropicalis


Alignment Length:491 Identity:143/491 - (29%)
Similarity:195/491 - (39%) Gaps:152/491 - (30%)


- Green bases have known domain annotations that are detailed below.


Human     8 ITLEDVAVDFTWEEWQLLGAAQKDLYRDVMLENYSNLVAVGYQASKPDAL-----------FKLE 61
            ||..||::.|:.:||..: ...|:||:|:| |.|.|..||.....:...:           ...|
 Frog   105 ITSGDVSIYFSMDEWDYI-EGHKELYKDLM-EKYQNYSAVEISDIQKSEIQDENTNNMCLTHSKE 167

Human    62 QGEQLWTIEDGIHSGACSDRVLLCAQAGAQWCELGSPQPPPPGFKRFLCLSPTPAPYLAHDIWKV 126
            ..|:...:|..|.|..|||.           |..|                      |..|:...
 Frog   168 TEEENDLVEAEIESNICSDE-----------CTAG----------------------LVSDVEDT 199

Human   127 DHVLERLQSES--LVNRRKPCHEHDAFENIVHCSKSQFLLGQNHDIFDLRGKSLKSNLTLVNQSK 189
            :....:.::||  ||.:..........|:   .|.|:.:|.. |....|..|.|: |:|      
 Frog   200 EQPSLKKENESPELVAQETTSTWQSILED---GSVSRNILSP-HSASRLSDKKLE-NIT------ 253

Human   190 GYEIKNSVEFTGNGDSFLHANHERLHTAIKFPASQKLISTK---SQFISPKHQKTRKLEKHHVCS 251
                ..|..|.|.            |.....||...:.:|:   |..||.:..||:..|..:|  
 Frog   254 ----STSPMFQGK------------HQEQNLPADSTICNTENCTSSSISYQCSKTKAQETGNV-- 300

Human   252 ECGKAFIKKSWLTD----------------HQVMHTGEKPHRCSLCEKAFSRKFMLTEHQRTHTG 300
            |.....:|....:|                |:....|||.|:|::|.|.|..|..||.|.|||||
 Frog   301 EWNSIEVKLEMSSDSESSSQEQSCRNFQSLHEDETEGEKIHKCNVCGKQFGYKCYLTVHLRTHTG 365

Human   301 EKPYECPECGKAFLKKSRLNIHQKTHTGEKPYICSECGKGFIQKGNLIVHQRIHTGEKPYICNEC 365
            |||::|.||||....|::|.|||:||||||||.|.||||.|              ..|||     
 Frog   366 EKPHKCDECGKYIASKAKLIIHQRTHTGEKPYSCKECGKQF--------------RSKPY----- 411

Human   366 GKGFIQKTCLIAHQRFHTGKTPFVCSECGKSCSQKSGLIKHQRIHTGEKPFECSECGKAFSTKQK 430
                                                 |::|.|.||||||..|.:|||.|:.|.:
 Frog   412 -------------------------------------LVEHMRSHTGEKPHRCDDCGKQFAYKSR 439

Human   431 LIVHQRTHTGERPYGCNECGKAFAYMSCLVKHKRIH 466
            ||||||||||.:|:.|.:|||.|.|:..|::|.:.|
 Frog   440 LIVHQRTHTGLKPHRCYQCGKHFDYVCYLIRHLKTH 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZNF350XP_016882583.1 None
LOC100487768XP_031746881.1 KRAB_A-box 105..138 CDD:143639 14/34 (41%)
COG5048 <218..460 CDD:227381 103/326 (32%)
C2H2 Zn finger 343..363 CDD:275368 9/19 (47%)
zf-H2C2_2 355..376 CDD:404364 14/20 (70%)
C2H2 Zn finger 371..391 CDD:275368 10/19 (53%)
zf-H2C2_2 387..408 CDD:404364 16/34 (47%)
C2H2 Zn finger 399..419 CDD:275368 12/75 (16%)
zf-H2C2_2 411..436 CDD:404364 15/66 (23%)
C2H2 Zn finger 427..447 CDD:275368 12/19 (63%)
C2H2 Zn finger 455..475 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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