DRSC/TRiP Functional Genomics Resources

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Protein Alignment PRDM13 and Y17G7B.22

DIOPT Version :10

Sequence 1:NP_067633.2 Gene:PRDM13 / 59336 HGNCID:13998 Length:707 Species:Homo sapiens
Sequence 2:NP_871969.1 Gene:Y17G7B.22 / 259467 WormBaseID:WBGene00012473 Length:167 Species:Caenorhabditis elegans


Alignment Length:69 Identity:21/69 - (30%)
Similarity:31/69 - (44%) Gaps:13/69 - (18%)


- Green bases have known domain annotations that are detailed below.


Human   603 CKVCLRPFGDPSNLNKHIRL-HAEGNTP-----YRCEFCGKVLVRRRDLERHVKSRH------PG 655
            |:.|:..|...|:|:.|.:| |...|.|     |.|:.|.:..:....|.|| |..|      ||
 Worm    66 CQKCMSAFHAESDLSNHEQLTHFNRNIPRKKFKYYCDKCNERFIYEHLLYRH-KEEHLHTGIIPG 129

Human   656 QSLL 659
            .:|:
 Worm   130 VALI 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PRDM13NP_067633.2 PR-SET_PRDM13 18..119 CDD:380974
C2H2 Zn finger 137..160 CDD:275369
zf-C2H2 137..159 CDD:395048
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..213
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 226..255
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 336..372
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 545..567
C2H2 Zn finger 575..595 CDD:275368
zf-C2H2 575..595 CDD:395048
SFP1 <578..653 CDD:227516 17/55 (31%)
C2H2 Zn finger 603..623 CDD:275368 7/20 (35%)
C2H2 Zn finger 632..650 CDD:275368 5/17 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 647..707 7/19 (37%)
Y17G7B.22NP_871969.1 None
Blue background indicates that the domain is not in the aligned region.

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