DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mccc2 and Pccb

DIOPT Version :9

Sequence 1:NP_652724.1 Gene:Mccc2 / 59261 FlyBaseID:FBgn0042083 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_080111.1 Gene:Pccb / 66904 MGIID:1914154 Length:541 Species:Mus musculus


Alignment Length:519 Identity:174/519 - (33%)
Similarity:254/519 - (48%) Gaps:81/519 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 LKGGGQKAIERHTSRGKLLARERINLLLDKGSPFLELSALAGHEL--YG----EEVVNSGGIVTG 121
            |.||||:.|:....||||.|||||:||||.|| |:|......|..  :|    :.......:|||
Mouse    49 LLGGGQRRIDAQHKRGKLTARERISLLLDPGS-FMESDMFVEHRCADFGMAADKNKFPGDSVVTG 112

  Fly   122 VGRVCGTECLVVANDATVKGGSYYPITVKKHLRAQEIAQENRLPCIYLVDSGGA-------NLPR 179
            .||:.|....|.:.|.||.|||......:|..:..:.|.....|.|.|.|||||       :|..
Mouse   113 RGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAG 177

  Fly   180 QADVFPDKLHFGRIFYNQANMSAQG-IPQIAVVMGSCTAGGAYVPAMADESIIVKKQGTIFLAGP 243
            .||:|            ..|::|.| ||||:::||.|..|..|.||:.|.:.:||....:|:.||
Mouse   178 YADIF------------LRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGP 230

  Fly   244 PLVKAATGEEVSAEDLGGADLHCKTSGVTDHYALD-DEHALYLARQIVSNLNLSATNSYNDQLMH 307
            .:||:.|.|:|:.|.||||..|...|||. |.|.| |..||...|:..:.|.||:.:        
Mouse   231 EVVKSVTNEDVTQEQLGGAKTHTTVSGVA-HRAFDNDVDALCNLREFFNFLPLSSQD-------- 286

  Fly   308 SSQVNFQTATPPSAVEEPRYDAE----ELYGIVGPNLTKSFDVREVIARIVDGSRFTEFKKLYGE 368
                       |:.:.|....::    ||..:|....:|::::.::|..::|...|.|....|.:
Mouse   287 -----------PAPIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPSYAK 340

  Fly   369 TLVCGFAKLYGHTVGIVGN-----NGVLFSESALKGAHFIQLCAQRKIPLVFLQNITGFMVGRDA 428
            .:|.|||::.|.|||||||     :|.|...|::|||.|::.|....|||:...::.||:.|...
Mouse   341 NIVVGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQ 405

  Fly   429 EANGIAKNGAKMVTAVACANVPKFTVIIGGSYGAGNYGMCGRAYSPRFL----YMWPNSRISVMG 489
            |..||.::|||::.|.|.|.|||.|||...:|| |.|.:..   |...|    |.||.:.|:|||
Mouse   406 EYGGIIRHGAKLLYAFAEATVPKITVITRKAYG-GAYDVMS---SKHLLGDTNYAWPTAEIAVMG 466

  Fly   490 GTQAANVMAQITEDQRKRAGKEFSEEEAQKLKAPIVEMFEAEGSPYYSTARLWDDGIIDPANTR 553
            ...|..::.:             ..::.:..:|..||.|   .:|:.:..|.:.|.||.|::||
Mouse   467 AKGAVEIIFK-------------GHQDVEAAQAEYVEKF---ANPFPAAVRGFVDDIIQPSSTR 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mccc2NP_652724.1 PLN02820 27..578 CDD:178415 174/519 (34%)
crotonase-like <82..254 CDD:304874 66/185 (36%)
crotonase-like <359..>487 CDD:304874 54/136 (40%)
PccbNP_080111.1 Carboxyltransferase. /evidence=ECO:0000255|PROSITE-ProRule:PRU01138 34..535 174/519 (34%)
MmdA 39..541 CDD:227136 174/519 (34%)
crotonase-like 65..>212 CDD:304874 57/159 (36%)
crotonase-like <319..509 CDD:304874 68/209 (33%)
Acyl-CoA binding. /evidence=ECO:0000255 327..360 15/32 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4799
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2393
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.760

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