DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18530 and Lipk

DIOPT Version :10

Sequence 1:NP_652714.2 Gene:CG18530 / 59241 FlyBaseID:FBgn0042207 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001099844.1 Gene:Lipk / 294094 RGDID:1309724 Length:397 Species:Rattus norvegicus


Alignment Length:373 Identity:118/373 - (31%)
Similarity:194/373 - (52%) Gaps:25/373 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ILSVCTQIVNG---------ITS-------AEIIASHNYPVEIHTVVTRDGYLLNAFRIPNSIYC 56
            :|:.|...:.|         ||:       :|||:...||.|.|.|||.|||:|..:|||:...|
  Rat     4 LLATCCMFLPGPIYGHMQESITNPEANMNISEIISYWGYPYERHDVVTEDGYILGTYRIPHGKGC 68

  Fly    57 EQSGTKPAVLF-QHGMTASSDVFLVNGPRDALPFMLADACFDVWLSNSRGTRYSRRHVSLDPSDE 120
            .:.....||:: |||:.||:..::.|.|.::|.|:|||:.:||||.||||..:||:|:.|.|...
  Rat    69 SRKAVPKAVVYLQHGLIASASNWICNLPNNSLAFLLADSGYDVWLGNSRGNTWSRKHLRLSPKSP 133

  Fly   121 DFWRFSWHEIGTEDVAAFIDYILGTTNQSAVHYVGHSQGCTTLVVLLSMRPEYNQFVKTAILLGP 185
            ::|.||..|:...|:.|.|:.||..:.|..:.|||||||.|...:..|..||..:.::....|.|
  Rat   134 EYWAFSLDEMAKYDLPATINLILEKSGQKQLFYVGHSQGTTIAFIAFSTNPELAKKIRMFFALAP 198

  Fly   186 PVFMGHTHT----LGQIFLRTLIMSMPDCEFMFHNRILNKILRRICGLFVVRVYCSTFFMIVNGK 246
            .|.:.:|.:    |..:..:.:.:...|..|..|..:...|..::|...:.|..||.|...::|.
  Rat   199 VVTVKYTQSPMKKLTTLSRKAVKILFGDKMFSTHTWLEQFIATKVCNRKLFRQLCSNFLFSLSGF 263

  Fly   247 FSDHLNTSAIPLIAATLPAGVSSRQPKHFIQLTDSGRFRPFDFGIL-RNLINYRSLTPPDYPLHN 310
            ...:||.|.:.:..|..|||.|.:...|:.|..:||:.:.||:|.. :|::::..||||.|.:..
  Rat   264 DPQNLNMSRLDVYMAQSPAGTSVQNMLHWAQAVNSGQLQAFDWGNPDQNMMHFNQLTPPVYNISK 328

  Fly   311 VRPLTPVHIFYSDDDLSAAKEDVENFATSLPEAVMHRISTPSWHHMDF 358
            :|  .|..::....|:.|.::|.:|....:...:.:: ..|.::||||
  Rat   329 MR--VPTAMWSGGRDVVADEKDTKNLLPKVANLIYYK-EIPHYNHMDF 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18530NP_652714.2 PLN02872 22..377 CDD:215470 113/343 (33%)
LipkNP_001099844.1 PLN02872 34..388 CDD:215470 113/343 (33%)

Return to query results.
Submit another query.