DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17234 and Tpsb2

DIOPT Version :9

Sequence 1:NP_722785.1 Gene:CG17234 / 59225 FlyBaseID:FBgn0042187 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_062053.2 Gene:Tpsb2 / 29268 RGDID:3065 Length:274 Species:Rattus norvegicus


Alignment Length:271 Identity:83/271 - (30%)
Similarity:123/271 - (45%) Gaps:43/271 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LLLLALDFLSAGQVNR----WEQR--IIGGEPIGIEQVPWQVSLQY---FGDHVCGGSIYSENII 62
            ||||||..| |..|:.    .:||  |:||......:.||||||::   |..|.||||:.....:
  Rat     5 LLLLALSPL-ASLVHAAPCPVKQRVGIVGGREASESKWPWQVSLRFKFSFWMHFCGGSLIHPQWV 68

  Fly    63 VTAAHCFFDEEGNRL-DDQGYQVRAGSALTDSNGTLVDVAALIIHEEYAFDLNINDIAIVRLSTP 126
            :|||||.    |..: ..:.::|:...........|:.|...::|..|....:..|||::.|..|
  Rat    69 LTAAHCV----GLHIKSPELFRVQLREQYLYYADQLLTVNRTVVHPHYYTVEDGADIALLELENP 129

  Fly   127 LEFTSKVQPI---PLAKTNPYPRSIALVSGWGVSYILNDSTNLYPTHLQGLALHIKSIFSC---- 184
            :..::.:.|.   |.::|.|...| ..|:|||  .|.:|...|.|..|:.:.:.|.....|    
  Rat   130 VNVSTHIHPTSLPPASETFPSGTS-CWVTGWG--DIDSDEPLLPPYPLKQVKVPIVENSLCDRKY 191

  Fly   185 ----------RLFDPSLLCAGTYGRTACHGDSGGPLVVNKQ----LVGVVSWGRKGCVSS---AF 232
                      .:....:||||.....:|.||||||||...:    ..|||||| :||..:   ..
  Rat   192 HTGLYTGDDVPIVQDGMLCAGNTRSDSCQGDSGGPLVCKVKGTWLQAGVVSWG-EGCAEANRPGI 255

  Fly   233 FVSVPYFREWI 243
            :..|.|:.:||
  Rat   256 YTRVTYYLDWI 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17234NP_722785.1 Tryp_SPc 26..243 CDD:214473 71/246 (29%)
Tryp_SPc 27..243 CDD:238113 70/243 (29%)
Tpsb2NP_062053.2 Tryp_SPc 30..268 CDD:238113 72/245 (29%)
Tryp_SPc 30..266 CDD:214473 70/243 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.