DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17239 and svh-1

DIOPT Version :10

Sequence 1:NP_722784.1 Gene:CG17239 / 59224 FlyBaseID:FBgn0042186 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_501379.2 Gene:svh-1 / 182375 WormBaseID:WBGene00006620 Length:951 Species:Caenorhabditis elegans


Alignment Length:238 Identity:69/238 - (28%)
Similarity:109/238 - (45%) Gaps:22/238 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 RIVGGDLITILSVPWQASILRLG--RFHCGAAIYSEDIVITAAHCL-TDRETEFLSVRVG---SS 81
            |:|||......:.||.|::....  ..||||:|..:..:||||||. .|.......|.||   ::
 Worm   712 RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNN 776

  Fly    82 FTFFGGQVVRVSSVLLHEEYDQSWSNDIAVMRLQ---SKLRLGSAVSVIPLADTPPASGSPATVS 143
            .|....|:..:..:..:..|...:|:|||::.:.   .:....:....:|..|.....|....||
 Worm   777 QTDGNEQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVS 841

  Fly   144 GWGAIGFKKNYPMSILSASVDIVDQDQCRRS---YGRKITKDMICAA--APGKDACSGDSGGPLV 203
            |||::|.:  |...:.:|.:.|:::..|..|   |. .:::...||.  ..|.|:|.||||||..
 Worm   842 GWGSMGLR--YAERLQAALIPIINRFDCVNSSQIYS-SMSRSAFCAGYLEGGIDSCQGDSGGPFA 903

  Fly   204 SGNK-----LVGIVSFGKECAHPEYPGVYANVAELKPWILGAI 241
            ...:     |.|::|:|..||..:.||:|..||....||...|
 Worm   904 CRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWISAII 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17239NP_722784.1 Tryp_SPc 24..237 CDD:238113 65/231 (28%)
svh-1NP_501379.2 KR 227..306 CDD:214527
LDLa 320..355 CDD:238060
PAN_AP_HGF 373..434 CDD:238532
LDLa 558..590 CDD:197566
SR 599..681 CDD:214555
Tryp_SPc 713..945 CDD:238113 67/234 (29%)
Blue background indicates that the domain is not in the aligned region.

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