DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18823 and Hnrnpl

DIOPT Version :9

Sequence 1:NP_659571.1 Gene:CG18823 / 59184 FlyBaseID:FBgn0042146 Length:106 Species:Drosophila melanogaster
Sequence 2:XP_006228753.3 Gene:Hnrnpl / 80846 RGDID:71059 Length:671 Species:Rattus norvegicus


Alignment Length:35 Identity:11/35 - (31%)
Similarity:19/35 - (54%) Gaps:3/35 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 ESEATSAIDALDQIVFKSKVLQVSNATFPPIEGGQ 90
            |.|.|..:..| .|:|:::.|..|  .||.::.|:
  Rat    72 EPEQTQPLKVL-PILFQTRYLPQS--PFPLVKRGR 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18823NP_659571.1 RRM <9..>79 CDD:223796 7/22 (32%)
RRM_1 16..76 CDD:278504 6/19 (32%)
HnrnplXP_006228753.3 hnRNP-L_PTB 145..669 CDD:273733
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.