DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18823 and ptbp2a

DIOPT Version :9

Sequence 1:NP_659571.1 Gene:CG18823 / 59184 FlyBaseID:FBgn0042146 Length:106 Species:Drosophila melanogaster
Sequence 2:NP_001315358.1 Gene:ptbp2a / 541437 ZFINID:ZDB-GENE-050320-141 Length:512 Species:Danio rerio


Alignment Length:58 Identity:18/58 - (31%)
Similarity:33/58 - (56%) Gaps:4/58 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SPRSRI-WVRNLP-PCTRQELVMLCLPFGKILGSLIV--DNEGFIQFARESEATSAID 64
            :|.||: .:|.|| ..:..|::.|.|||||:...|.:  .|:.|::.:.|..|.:.::
Zfish    56 APPSRVLHIRKLPNDVSEAEIIALGLPFGKVTNILTLKGKNQAFLELSTEEAAMTMVN 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18823NP_659571.1 RRM <9..>79 CDD:223796 18/58 (31%)
RRM_1 16..76 CDD:278504 15/53 (28%)
ptbp2aNP_001315358.1 hnRNP-L_PTB 58..512 CDD:273733 17/56 (30%)
RRM1_PTBP1_like 60..140 CDD:241132 16/54 (30%)
RRM2_PTBP1_like 165..259 CDD:241137
RRM_SF 307..412 CDD:302621
RRM4_PTBP2 433..512 CDD:241146
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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