DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18823 and rbm20

DIOPT Version :9

Sequence 1:NP_659571.1 Gene:CG18823 / 59184 FlyBaseID:FBgn0042146 Length:106 Species:Drosophila melanogaster
Sequence 2:XP_021325295.1 Gene:rbm20 / 497540 ZFINID:ZDB-GENE-050208-256 Length:1067 Species:Danio rerio


Alignment Length:86 Identity:21/86 - (24%)
Similarity:41/86 - (47%) Gaps:17/86 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PRSRIWVRNLP--PCTRQELVMLCLPFGKILGSLIV--DNEGFIQFARESEATSAIDALDQIVFK 72
            |...:.:.|||  .||..:::.|.|||||:...:::  .::.|::.|....|.:.:         
Zfish   457 PGRVVHICNLPEGSCTENDVINLGLPFGKVTNYILMRSTHQAFLEMAYVEAAQAMV--------- 512

  Fly    73 SKVLQVSNATFPPIEGGQVLV 93
             :..|:..||   |.|.::|:
Zfish   513 -QYYQLQPAT---INGQKLLI 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18823NP_659571.1 RRM <9..>79 CDD:223796 16/70 (23%)
RRM_1 16..76 CDD:278504 14/63 (22%)
rbm20XP_021325295.1 RRM_RBM20 459..534 CDD:241129 20/84 (24%)
NK <529..570 CDD:327404 0/1 (0%)
THRAP3_BCLAF1 573..>805 CDD:317794
MIP-T3 695..1002 CDD:313469
ZnF_U1 1013..1047 CDD:197732
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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