DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18823 and Ncoa5

DIOPT Version :9

Sequence 1:NP_659571.1 Gene:CG18823 / 59184 FlyBaseID:FBgn0042146 Length:106 Species:Drosophila melanogaster
Sequence 2:NP_001100013.1 Gene:Ncoa5 / 296372 RGDID:1307702 Length:578 Species:Rattus norvegicus


Alignment Length:68 Identity:15/68 - (22%)
Similarity:29/68 - (42%) Gaps:17/68 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SLIVDN--------EGFIQFARESE---ATSAIDALDQIVFKSKVLQVSNATF------PPIEGG 89
            :|:.||        :..|.:.||.:   ..|:.|:|...:.:..:...|.::.      .|::.|
  Rat   346 NLLADNRYLTAEETDKIINYLRERKERLLRSSADSLPGPISRQPLGAASGSSLKTQPSSQPLQSG 410

  Fly    90 QVL 92
            |||
  Rat   411 QVL 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18823NP_659571.1 RRM <9..>79 CDD:223796 9/47 (19%)
RRM_1 16..76 CDD:278504 9/44 (20%)
Ncoa5NP_001100013.1 HisS <185..255 CDD:223202
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D421126at33208
OrthoFinder 1 1.000 - - FOG0006056
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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