DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18823 and Ncoa5

DIOPT Version :9

Sequence 1:NP_659571.1 Gene:CG18823 / 59184 FlyBaseID:FBgn0042146 Length:106 Species:Drosophila melanogaster
Sequence 2:NP_659141.1 Gene:Ncoa5 / 228869 MGIID:2385165 Length:579 Species:Mus musculus


Alignment Length:68 Identity:15/68 - (22%)
Similarity:29/68 - (42%) Gaps:17/68 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SLIVDN--------EGFIQFARESE---ATSAIDALDQIVFKSKVLQVSNATF------PPIEGG 89
            :|:.||        :..|.:.||.:   ..|:.|:|...:.:..:...|.::.      .|::.|
Mouse   347 NLLADNRYLTAEETDKIINYLRERKERLLRSSADSLPGPISRQPLGAASGSSLKSQPSSQPLQSG 411

  Fly    90 QVL 92
            |||
Mouse   412 QVL 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18823NP_659571.1 RRM <9..>79 CDD:223796 9/47 (19%)
RRM_1 16..76 CDD:278504 9/44 (20%)
Ncoa5NP_659141.1 Transcription repression 1..158
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..77
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 148..172
HisS <186..256 CDD:223202
LXXLL motif 345..349 0/1 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..428 8/37 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 446..529
Transcription activation 458..579
PRK14971 <459..>543 CDD:237874
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006056
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.