DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18823 and Ptbp1

DIOPT Version :9

Sequence 1:NP_659571.1 Gene:CG18823 / 59184 FlyBaseID:FBgn0042146 Length:106 Species:Drosophila melanogaster
Sequence 2:NP_001070831.1 Gene:Ptbp1 / 19205 MGIID:97791 Length:555 Species:Mus musculus


Alignment Length:66 Identity:22/66 - (33%)
Similarity:34/66 - (51%) Gaps:3/66 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 FRNDIPAPTSPRSRIWVRNLP-PCTRQELVMLCLPFGKILGSLIV--DNEGFIQFARESEATSAI 63
            |:.|..:...|...|.||.|| ..|..|::.|.|||||:...|::  .|:.||:...|..|.:.:
Mouse    46 FKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMV 110

  Fly    64 D 64
            :
Mouse   111 N 111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18823NP_659571.1 RRM <9..>79 CDD:223796 20/59 (34%)
RRM_1 16..76 CDD:278504 19/52 (37%)
Ptbp1NP_001070831.1 hnRNP-L_PTB 56..555 CDD:273733 20/56 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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