DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ea and Tspan4

DIOPT Version :10

Sequence 1:NP_525012.2 Gene:Tsp42Ea / 59178 FlyBaseID:FBgn0029508 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001390287.1 Gene:Tspan4 / 64540 MGIID:1928097 Length:333 Species:Mus musculus


Alignment Length:227 Identity:59/227 - (25%)
Similarity:105/227 - (46%) Gaps:36/227 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VKYILFIFNLLCSI--CGILLIVFGALLFSKVRNMDDFAEALRTQQVPVTMIILGTIILLISWFG 70
            |||::|.||||..:  ||:|.:  |..|.:...|....:.:..:......:|:.||.::.|.:.|
Mouse   104 VKYLMFAFNLLFWLGGCGVLGV--GIWLAATQGNFATLSSSFPSLSAANLLIVTGTFVMAIGFVG 166

  Fly    71 CCGAIRESYCMSMTYSILLFVLMIGQLALVIYMWVQKDK---YLE-----------IMGDV-VEK 120
            |.||::|:.|:.:|:.:||.::.:.:..:.:..:...||   |.:           ..|:| :..
Mouse   167 CIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQDLKKGLHLYGTQGNVGLTN 231

  Fly   121 AWNHRTSRSDYMDAIQISMKCCGRSGYTDY--AYQG-KFPPSCCSD-TNNCRWE---TVYRRGCK 178
            ||:          .||...:|||.|.|||:  .|.. :.|.|||.: :::|...   |.::..|.
Mouse   232 AWS----------IIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSDSCGLHEPGTWWKSPCY 286

  Fly   179 VTFVEFWDRNSDIIKYAGLVIAAIEFVGFVFA 210
            .|...:...|...:...||..|.::.:|..||
Mouse   287 ETVKAWLQENLLAVGIFGLCTALVQILGLTFA 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EaNP_525012.2 Tetraspanin 8..215 CDD:459767 59/227 (26%)
Tspan4NP_001390287.1 Tetraspanin 104..323 CDD:459767 59/227 (26%)
NET-5_like_LEL 200..297 CDD:239418 25/106 (24%)

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