DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ea and prph2a

DIOPT Version :10

Sequence 1:NP_525012.2 Gene:Tsp42Ea / 59178 FlyBaseID:FBgn0029508 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_571641.1 Gene:prph2a / 58085 ZFINID:ZDB-GENE-000616-8 Length:345 Species:Danio rerio


Alignment Length:272 Identity:44/272 - (16%)
Similarity:100/272 - (36%) Gaps:84/272 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ISMVKYILFIFNLLCSICGILLIVFGALLFSKV--RNMDDFAEALRTQQVPVTMIILGTIILLIS 67
            ::.:.::::.|:::..:     :||...||.|:  |...:..:...:..||..:|.:|.:...::
Zfish    16 LAQMLWLMYWFSVMAGV-----LVFSMGLFFKIELRKRSELMDNNESHFVPNILIGVGLLACCLN 75

  Fly    68 WFG---CCGAIRES--------------YCMSMTYSILLFVLMIGQLALVIYMWVQKD-----KY 110
            .||   |..::..|              .|:...:.:::...|...:.:.:...:.:.     ||
Zfish    76 AFGGKVCYDSLDSSKYAKWKSIMTPFLICCLVFNFLLIVTAAMCFAMRIPLEFTLAEGLKNGMKY 140

  Fly   111 LEIMGDVVEKAWNHRTSRSDYMDAIQISMKCCGRSGYTDY------------------------A 151
            .:.. |...:.:..||     :|.:|:..:|||.:.|.|:                        .
Zfish   141 YKDT-DTPGRCYMKRT-----LDLMQMEFRCCGNNNYKDWFEIQWVSNRYLDFSAKEVKDRISSN 199

  Fly   152 YQGKF-----PPSCCSD-----------TNNCRWET---------VYRRGCKVTFVEFWDRNSDI 191
            ..||:     |.|||:.           |||....:         :::|||:...|.::....:.
Zfish   200 VDGKYLMDGVPFSCCNPSSPRPCIQQQITNNSAHYSYDHYTEDLNIWKRGCRDALVSYYGGMMNT 264

  Fly   192 IKYAGLVIAAIE 203
            |....|::..::
Zfish   265 IGVLVLLVTLLQ 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EaNP_525012.2 Tetraspanin 8..215 CDD:459767 44/269 (16%)
prph2aNP_571641.1 Tetraspanin 16..>167 CDD:459767 25/161 (16%)
peripherin_like_LEL 120..262 CDD:239415 25/147 (17%)

Return to query results.
Submit another query.