DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ea and Tspan12

DIOPT Version :10

Sequence 1:NP_525012.2 Gene:Tsp42Ea / 59178 FlyBaseID:FBgn0029508 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001015026.1 Gene:Tspan12 / 362326 RGDID:1311102 Length:305 Species:Rattus norvegicus


Alignment Length:262 Identity:49/262 - (18%)
Similarity:97/262 - (37%) Gaps:59/262 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ISMVKYILFIFNLLCSICGILLIVFGALLFSKVRNMDDFAEALRTQQV------PV---TMIILG 60
            :..::.:|:..|||..:..|.::...|.:...:.|:.......|.::.      ||   .||.:.
  Rat     7 VKCLRCLLYALNLLFWLMSISVLAVSAWMRDYLNNVLTLTAETRVEEAVILTYFPVVHPVMIAVC 71

  Fly    61 TIILLISWFGCCGAIRESYCMSMTYSILLFVLMIGQLALVIYMWVQKDKYLEIM-----GDVV-- 118
            ..::::...|.||.::.:..:...|...|.|:...:||..::.:.|     |:|     .|:|  
  Rat    72 CFLIIVGMLGYCGTVKRNLLLLAWYFGTLLVIFCVELACGVWTYEQ-----EVMVPVQWSDMVTL 131

  Fly   119 ---------------EKAWNHRTSRSDYMDAIQISMKCCGRSGYTDYAYQGKF---PPSCC-SDT 164
                           ..|||:          .|...||||...:||:....:.   |.||| .:.
  Rat   132 KARMTNYGLPRYRWLTHAWNY----------FQREFKCCGVVYFTDWLEMTEMDWPPDSCCVREF 186

  Fly   165 NNCRWET-------VYRRGCKVTFVEF--WDRNSDIIKYAGLVIAAIEFVGFVFACCLANSIRNY 220
            ..|..:.       :|:.||......|  ..:...::::.|:.|...:.:..:....|..::...
  Rat   187 PGCSKQAHQEDLSDLYQEGCGKKMYSFLRGTKQLQVLRFLGISIGVTQILAMILTITLLWALYYD 251

  Fly   221 RR 222
            ||
  Rat   252 RR 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EaNP_525012.2 Tetraspanin 8..215 CDD:459767 47/250 (19%)
Tspan12NP_001015026.1 Tetraspanin 10..246 CDD:459767 47/250 (19%)
TM4SF12_like_LEL 116..218 CDD:239410 24/116 (21%)

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