DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ea and Tspan5

DIOPT Version :10

Sequence 1:NP_525012.2 Gene:Tsp42Ea / 59178 FlyBaseID:FBgn0029508 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001004090.2 Gene:Tspan5 / 362048 RGDID:1303176 Length:268 Species:Rattus norvegicus


Alignment Length:268 Identity:61/268 - (22%)
Similarity:109/268 - (40%) Gaps:72/268 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSCGISMVKYILFIFNLLCSICGILLIVFGALLF---------SKVRNMDDFAEALRTQQVPVTM 56
            :||   .:||.:|.||::....||..:..|...:         |.:.::..|.        ||.:
  Rat    11 VSC---CIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFD--------PVWL 64

  Fly    57 -IILGTIILLISWFGCCGAIRESYCMSMTYSILLFV-----LMIGQLALVIYMWVQKDKYLEIMG 115
             :::|.::.::.:.||.||:||:..:...:|:.|.:     |..|.||.|...|::...|..|..
  Rat    65 FLVVGGVMFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINN 129

  Fly   116 DVVEKAWNHRTSRSDYMDAIQISMKCCGRSGYTDYAYQGKF--------------PPSCCS---- 162
            ::  :|:.......:.:|..|...:|||..|..|:.....|              |.|||:    
  Rat   130 NI--RAYRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERCGVPFSCCTKDPA 192

  Fly   163 -DTNN--CRWE-----------TVYRRGCKVTFVEFWDRNSDIIKYAGLVIAAIEFVGF----VF 209
             |..|  |.::           .:|.:||...|.::...|..|:  ||:      |:|.    :|
  Rat   193 EDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIV--AGI------FIGIALLQIF 249

  Fly   210 ACCLANSI 217
            ..|||.::
  Rat   250 GICLAQNL 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EaNP_525012.2 Tetraspanin 8..215 CDD:459767 58/257 (23%)
Tspan5NP_001004090.2 Tetraspanin 15..258 CDD:459767 59/261 (23%)
TM4SF9_like_LEL 113..233 CDD:239412 24/121 (20%)

Return to query results.
Submit another query.