DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ea and Tsp39D

DIOPT Version :9

Sequence 1:NP_525012.2 Gene:Tsp42Ea / 59178 FlyBaseID:FBgn0029508 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_523612.3 Gene:Tsp39D / 35405 FlyBaseID:FBgn0032943 Length:235 Species:Drosophila melanogaster


Alignment Length:236 Identity:66/236 - (27%)
Similarity:120/236 - (50%) Gaps:15/236 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SCGISMVKYILFIFNLLCSICGILLIVFGALLFSKVRNMDDFAEALRTQQVPVTMIILGTIILLI 66
            |.|::.|||:.|..|||.::.|:|:.:.|.::.....:..:|... .....|:.::|:|..:.:|
  Fly     3 SGGLTCVKYLTFFCNLLFALTGLLIFLVGGMVQLNYAHYSNFVSD-HVWTAPIILMIVGAAVAVI 66

  Fly    67 SWFGCCGAIRESYCMSMTYSILLFVLMIGQLALVIYMWVQKDKYLEIMGDVVEKAWNHRTSRSDY 131
            .:.|||||::||.||.:::::|..|:.:.::.|.:..:|:.....:||.........|...|:||
  Fly    67 CFLGCCGALKESSCMILSFALLAVVIFLFEIGLGLAGYVKHTGLHQIMESQFNSTMQHYKERADY 131

  Fly   132 MDA---IQISMKCCGRSGYTDY--AYQGK-FPPSCC-----SDTNNCRWETVYRRGCKVTFVEFW 185
            .||   :|..:.|||.:|..|:  .|:.. .|.:||     |:...|......:.||....:|..
  Fly   132 RDAWTLLQTELDCCGINGPNDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHGCLQKLLEIL 196

  Fly   186 DRNSDIIKYAGLVIAAIEFVGFVFACCLANSIRNYRRRAEY 226
            |..:.|:....|.:|.|:.:..:|||||   .|::||..::
  Fly   197 DSKTLILASVVLGVAGIQMLTILFACCL---YRSFRRSYDH 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EaNP_525012.2 Tetraspannin 8..217 CDD:278750 61/219 (28%)
tetraspanin_LEL 104..188 CDD:239401 25/94 (27%)
Tsp39DNP_523612.3 Tetraspannin 8..227 CDD:278750 61/222 (27%)
tetraspanin_LEL 104..200 CDD:239401 25/95 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.