DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ea and Rom1

DIOPT Version :10

Sequence 1:NP_525012.2 Gene:Tsp42Ea / 59178 FlyBaseID:FBgn0029508 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001009690.1 Gene:Rom1 / 309201 RGDID:1306070 Length:351 Species:Rattus norvegicus


Alignment Length:231 Identity:46/231 - (19%)
Similarity:85/231 - (36%) Gaps:54/231 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FIFNLLCSICGILLIVFGALLFSKVRNMDDF-AEALRTQQVPVTMIILGTIILLISWFGCCGAIR 76
            ::.:.|.::.|.|.::....|..::.::..| |.:.....:|.|.:..|. :.|.:..|..||.|
  Rat    22 WLLSWLLALAGGLTLLCSGHLLVQLWHLGTFLAPSCSFPALPQTALAAGA-VALGTGLGGAGASR 85

  Fly    77 ESYCMSMTY----SILLFVLMIGQ----------LALVIYMWVQKDKYLEIMGDVVEKAWNH--- 124
            .|...:. |    .:|..:|::|.          |.|.:.:.|...:.||   :.::.|..|   
  Rat    86 ASLDAAQ-YPPWRGVLTPLLVVGTAAGGGLLTLGLGLALALPVSLHQGLE---EGLQAALAHYKD 146

  Fly   125 -----RTSRSDYMDAIQISMKCCGRSGYTDYAYQGKFPPSCCSDTNNCRWETVYRRGCKVTFVEF 184
                 .......||.:|:...||||.||.|:.                        |.:.....:
  Rat   147 TEVPGHCQAKRLMDELQLRYHCCGRHGYKDWF------------------------GVQWVSSRY 187

  Fly   185 WDRN-SDIIKYAGLVIAAIEFV-GFVFACCLANSIR 218
            .|.| .|::......:..:..: |..|:||..:|.|
  Rat   188 LDPNDQDVVDRIQSNVEGLYLIDGVPFSCCNPHSPR 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EaNP_525012.2 Tetraspanin 8..215 CDD:459767 44/226 (19%)
Rom1NP_001009690.1 peripherin_like_LEL 128..264 CDD:239415 24/123 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..351
Blue background indicates that the domain is not in the aligned region.

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