DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ea and Tspan6

DIOPT Version :10

Sequence 1:NP_525012.2 Gene:Tsp42Ea / 59178 FlyBaseID:FBgn0029508 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001094142.1 Gene:Tspan6 / 302313 RGDID:1560160 Length:245 Species:Rattus norvegicus


Alignment Length:442 Identity:86/442 - (19%)
Similarity:143/442 - (32%) Gaps:146/442 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 ASDEPAAAPEKPEGEEDLMKYIDRTVAKDNQIGRRAEFLMAMLEDYNDSVRYEGMEPVEEPLIVP 328
            |.::|.|.|..|..:      ..|.|:       .||.|.|::.| .|.:|.:.: .|.|.::.|
  Rat   284 ALEKPTAGPLVPAYD------CSREVS-------TAEELEALITD-PDDMRMQAL-LVRERILGP 333

  Fly   329 KRRKSKHICDDHDHMHDKLHAHERDA--SASG-------VVRTEVSIEQAPRKPSRDFSRYKPID 384
            .            |.....:...|.|  :.||       :.:..:.::|:..:|      ..|:.
  Rat   334 A------------HPDTSYYIRYRGAVYADSGNFERCIRLWKYALDMQQSNLEP------LSPMT 380

  Fly   385 AAEPHGSSDGSDGEQGSVVRPARTK----------------QKQRESAARAAPPQTPPPPAPPRF 433
            |     ||..|..|..|.|...|.|                .|......||. .|...||.||:|
  Rat   381 A-----SSFLSFAELFSFVLQDRAKGTLAARVSFQDLMGVLSKSVREVERAV-AQRERPPEPPQF 439

  Fly   434 QKSHSETQFTNAASSSTQLAQPAQDDDEPKAHTPRMLKRIISMPATEHLDKVPSRPDTPQRPTLT 498
            .|:.|..                       .|...:|:::...|..|||.:     .|..|....
  Rat   440 SKALSII-----------------------LHLLFLLQKLRCGPEQEHLKR-----QTVYRLLKL 476

  Fly   499 KSSSSGSFSVVDL--QRTLISVERFTPEDFVHRAGADELVKPKSKLTTRKISWKSNEPPTPVATD 561
            ...:.|..:.:.:  .|...||.|:....|...|.|..|::..:.:.:|  .:.:|.|....|.:
  Rat   477 NPRARGGHTPLHMAVDRDTTSVGRYPVGRFPSLAVASLLLECGADVDSR--DYDNNTPLHIAAAN 539

  Fly   562 G---------PAGASFTIGGTTVVTTSAPPEVPARHRSDASRTEPEPAAPAKSAPTSAASFLVDD 617
            |         .|||.|                      ||:....:.|.....|.:|....| ..
  Rat   540 GCPDIMAALIRAGAHF----------------------DATNAAQQTAYQLLEAQSSGRHAL-HP 581

  Fly   618 VQDSSLRQFCLGSFLESSRVLPHHDVVNVLDCVYSATDNKENILEQFQTFLE 669
            :..::|:  ||.:...::..||:..:::                ||.:.|:|
  Rat   582 LNHTTLQ--CLAARAVTAHRLPYKGLIS----------------EQMEAFIE 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EaNP_525012.2 Tetraspanin 8..215 CDD:459767
Tspan6NP_001094142.1 Tetraspanin 17..235 CDD:459767
TM4SF2_6_like_LEL 112..209 CDD:239414
Blue background indicates that the domain is not in the aligned region.

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