DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eb and Tspan4

DIOPT Version :10

Sequence 1:NP_724525.1 Gene:Tsp42Eb / 59177 FlyBaseID:FBgn0042086 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001390287.1 Gene:Tspan4 / 64540 MGIID:1928097 Length:333 Species:Mus musculus


Alignment Length:228 Identity:59/228 - (25%)
Similarity:97/228 - (42%) Gaps:25/228 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 CLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQTIPICIIVIGSVTFVVA 67
            ||..: |||::..||:|..||..::.||..:.:|.|||........:.:....:||.|:....:.
Mouse   100 CLQGV-KYLMFAFNLLFWLGGCGVLGVGIWLAATQGNFATLSSSFPSLSAANLLIVTGTFVMAIG 163

  Fly    68 FFGCCGTIRENACCTTIYAICMLILFGLQLALSIWIFAANDKFLS----SMGKAVDKAWDENNAA 128
            |.||.|.::||.|....:.:.:|::|.|:..:::..||.:||..|    .:.|.:.....:.|..
Mouse   164 FVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQDLKKGLHLYGTQGNVG 228

  Fly   129 QGYPMDALQLAFSCCGNTGYQQY------ETVPSSCC-GYKDRTKVCEAEIYSQRPGCRQEFVDF 186
            .......:|..|.|||.:.|..:      ..||.||| .:.|...:.|...:.:.| | .|.|..
Mouse   229 LTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSDSCGLHEPGTWWKSP-C-YETVKA 291

  Fly   187 WASNTDLIRWSSLIIALFELGIFIMSCCLASAM 219
            |....           |..:|||.:...|...:
Mouse   292 WLQEN-----------LLAVGIFGLCTALVQIL 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EbNP_724525.1 Tetraspanin 8..216 CDD:459767 56/218 (26%)
Tspan4NP_001390287.1 Tetraspanin 104..323 CDD:459767 57/224 (25%)
NET-5_like_LEL 200..297 CDD:239418 25/109 (23%)

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