DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eb and tspan3b

DIOPT Version :10

Sequence 1:NP_724525.1 Gene:Tsp42Eb / 59177 FlyBaseID:FBgn0042086 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001076335.1 Gene:tspan3b / 569864 ZFINID:ZDB-GENE-070424-42 Length:253 Species:Danio rerio


Alignment Length:190 Identity:48/190 - (25%)
Similarity:88/190 - (46%) Gaps:21/190 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQTIPICIIVIGSVTFVVAFFGCCG 73
            |.:|..|||:|.|...:|..:|:.:..|..::..|...:.|....:.||.:|::.||:.|.|||.
Zfish    10 KTVLVFLNLIFWAAAGILCYIGAYVFITYDDYDHFFEDIYTFIPAMVIIAVGTLLFVIGFIGCCA 74

  Fly    74 TIRENACCTTIYAICMLILFGLQLALSIWIFAANDKFLSSMGKAVDKAWDE----NNAAQGYPMD 134
            ||||:.|....::..:|::|..::.:.:..:....|..:.:..::.|.::|    |..|....:|
Zfish    75 TIRESRCGLVTFSAVLLLVFATEVVVVVLGYIYRAKVEAVVNHSIQKVYNEYKGTNTDAPSRAID 139

  Fly   135 ALQLAFSCCGNTGYQQY-----------ETVPSSCC----GYKDRTKVCEAEIYSQRPGC 179
            .:|....|||...|..:           .:||.|||    ..:..|.:...::|.:  ||
Zfish   140 YVQRQLHCCGIHNYSDWMNTHWFIESKNNSVPVSCCKPTISNRTGTLMRPGDLYPE--GC 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EbNP_724525.1 Tetraspanin 8..216 CDD:459767 48/190 (25%)
tspan3bNP_001076335.1 Tetraspanin 9..235 CDD:459767 48/190 (25%)
TM4SF8_like_LEL 104..209 CDD:239416 20/96 (21%)

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