DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eb and Tspan5

DIOPT Version :10

Sequence 1:NP_724525.1 Gene:Tsp42Eb / 59177 FlyBaseID:FBgn0042086 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001004090.2 Gene:Tspan5 / 362048 RGDID:1303176 Length:268 Species:Rattus norvegicus


Alignment Length:266 Identity:64/266 - (24%)
Similarity:102/266 - (38%) Gaps:75/266 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LSAMFKYLLYLLNLVFVAGGILLIVVG------SIMLSTMGNFTAFDGGVNTQTIPICI-IVIGS 61
            :|...||.::..|::|...||..:.:|      ..:||.:.:.|.. ||.:    |:.: :|:|.
  Rat    11 VSCCIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDL-GGFD----PVWLFLVVGG 70

  Fly    62 VTFVVAFFGCCGTIRENACCTTIYAICMLILFGLQLALSIWIFAANDKFLSSMGKAVDKAW--DE 124
            |.|::.|.||.|.:|||......:::.:.|:|.|:|...:..|             |.|.|  |:
  Rat    71 VMFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAF-------------VFKDWIKDQ 122

  Fly   125 -----NNAAQGYP--------MDALQLAFSCCGNTGYQQYET-----------------VPSSC- 158
                 ||..:.|.        :|..|..:.|||..|...:..                 ||.|| 
  Rat   123 LYFFINNNIRAYRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERCGVPFSCC 187

  Fly   159 ------------CGYKDRTK-VCEAEIYSQRPGCRQEFVDFWASNTDLIRWSSLIIALFELGIFI 210
                        |||..|.| ..:.:|.....||..:|..:...|..::....:.|||.:    |
  Rat   188 TKDPAEDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFIGIALLQ----I 248

  Fly   211 MSCCLA 216
            ...|||
  Rat   249 FGICLA 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EbNP_724525.1 Tetraspanin 8..216 CDD:459767 61/260 (23%)
Tspan5NP_001004090.2 Tetraspanin 15..258 CDD:459767 63/262 (24%)
TM4SF9_like_LEL 113..233 CDD:239412 27/132 (20%)

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