DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eb and Rom1

DIOPT Version :10

Sequence 1:NP_724525.1 Gene:Tsp42Eb / 59177 FlyBaseID:FBgn0042086 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001009690.1 Gene:Rom1 / 309201 RGDID:1306070 Length:351 Species:Rattus norvegicus


Alignment Length:237 Identity:47/237 - (19%)
Similarity:84/237 - (35%) Gaps:84/237 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 YLLN-LVFVAGGILLIVVGSIMLST--MGNFTAFDGGVNTQTIPICIIVIGSVTFVVAFFGCCGT 74
            :||: |:.:|||:.|:..|.:::..  :|.|.|  ...:...:|...:..|:|..... .|..|.
  Rat    22 WLLSWLLALAGGLTLLCSGHLLVQLWHLGTFLA--PSCSFPALPQTALAAGAVALGTG-LGGAGA 83

  Fly    75 IREN----------ACCTTIYAICM-----LILFGLQLALSIWIFAANDKFLSSMGKAVDK---- 120
            .|.:          ...|.:..:..     |:..||.|||::.:         |:.:.:::    
  Rat    84 SRASLDAAQYPPWRGVLTPLLVVGTAAGGGLLTLGLGLALALPV---------SLHQGLEEGLQA 139

  Fly   121 --AWDENNAAQGY-----PMDALQLAFSCCGNTGYQQY--------------------------- 151
              |..::....|:     .||.|||.:.|||..||:.:                           
  Rat   140 ALAHYKDTEVPGHCQAKRLMDELQLRYHCCGRHGYKDWFGVQWVSSRYLDPNDQDVVDRIQSNVE 204

  Fly   152 -----ETVPSSCCGYKDRTKVCEAEIYSQRPGCRQEFVDFWA 188
                 :.||.|||           ..:|.||..:.:..|.:|
  Rat   205 GLYLIDGVPFSCC-----------NPHSPRPCLQSQLSDPYA 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EbNP_724525.1 Tetraspanin 8..216 CDD:459767 47/237 (20%)
Rom1NP_001009690.1 peripherin_like_LEL 128..264 CDD:239415 23/119 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..351
Blue background indicates that the domain is not in the aligned region.

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