DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eb and Rom1

DIOPT Version :10

Sequence 1:NP_724525.1 Gene:Tsp42Eb / 59177 FlyBaseID:FBgn0042086 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_033099.3 Gene:Rom1 / 19881 MGIID:97998 Length:351 Species:Mus musculus


Alignment Length:242 Identity:47/242 - (19%)
Similarity:81/242 - (33%) Gaps:92/242 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LYLLN-LVFVAGGILLIVVGSIM--LSTMGNFTAFDGGVNTQTIPICIIVIGSVTFVVAFFGCCG 73
            ::||: |:.:.||:.|:..|.::  |..:|.|.|  ...:...:|...:..|:|..... .|..|
Mouse    21 IWLLSWLLALVGGLTLLCSGHLLVQLGHLGTFLA--PSCSFPALPQTALAAGTVALGTG-LGGAG 82

  Fly    74 TIREN----------ACCTTIYAI-------CMLILFGLQLALSIWIFAANDKFLSSMGKAVDKA 121
            ..|.:          ...|.:.|:       .:.:..||.|||.:           |:.:.:::.
Mouse    83 ASRASLDAAQYPPWRGVLTPLLAVGTAAGGGLLTLALGLALALPV-----------SLNQGLEEG 136

  Fly   122 WDENNAAQGYP-------------MDALQLAFSCCGNTGYQQY---------------------- 151
            .:.  |...|.             ||.|||.:.|||..||:.:                      
Mouse   137 LEA--ALAHYKDTEVPGRCQAKRLMDELQLRYHCCGRHGYKDWFGVQWVSNRYLDPSDQDVVDRI 199

  Fly   152 ----------ETVPSSCCGYKDRTKVCEAEIYSQRPGCRQEFVDFWA 188
                      :.||.|||           ..:|.||..:.:..|.:|
Mouse   200 QSNVEGLYLIDGVPFSCC-----------NPHSPRPCLQSQLSDPYA 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EbNP_724525.1 Tetraspanin 8..216 CDD:459767 47/242 (19%)
Rom1NP_033099.3 peripherin_like_LEL 128..264 CDD:239415 23/121 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..351
Blue background indicates that the domain is not in the aligned region.

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