DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eb and Upk1a

DIOPT Version :10

Sequence 1:NP_724525.1 Gene:Tsp42Eb / 59177 FlyBaseID:FBgn0042086 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_081091.1 Gene:Upk1a / 109637 MGIID:98911 Length:257 Species:Mus musculus


Alignment Length:256 Identity:46/256 - (17%)
Similarity:77/256 - (30%) Gaps:92/256 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LIVVGS--IMLSTMGNF--TAFDGGVNTQTIPI--------------CIIVIGSVTFVVAFFGCC 72
            |:|||:  |:||.:..|  |.:......:..|:              ..|..|...||||.||..
Mouse    18 LLVVGNIIILLSGLALFAETVWVTADQYRVYPLMGVSGKDDVFAGAWIAIFCGFSFFVVASFGVG 82

  Fly    73 GTIRENACCTTIYAICMLILFGLQLALSIWIFAANDKFLSS-----------------MGKAVDK 120
            ..:.........|.:.|||::..:.|..|..:...|..:|:                 .|:.:.:
Mouse    83 AALCRRRYMILTYLLLMLIVYIFECASCITSYTHRDYMVSNPSLITKQMLTYYSADTDQGQELTR 147

  Fly   121 AWDENNAAQGYPMDALQLAFSCCGNTGYQQYETVPSSCCGYKDRTKVCEAEIYSQRP-------- 177
            .||.           :.:...|||.:|       |.....|....:....|:....|        
Mouse   148 LWDR-----------IMIEQECCGTSG-------PMDWVNYTSAFRAATPEVVFPWPPLCCRRTG 194

  Fly   178 --------GCRQEFVDF------------------WASNTDLIRWSSLIIALFELGIFIMS 212
                    |||...:|:                  |.     |.|....|.::.|.:.:::
Mouse   195 NFIPINEDGCRVGHMDYLFTKGCFEHIGHAIDSYTWG-----ISWFGFAILMWTLPVMLIA 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EbNP_724525.1 Tetraspanin 8..216 CDD:459767 46/256 (18%)
Upk1aNP_081091.1 Tetraspanin 23..>161 CDD:459767 27/148 (18%)
uroplakin_I_like_LEL 111..229 CDD:239409 18/135 (13%)

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